Seriola dumerili (greater amberjack): 111229686
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Entry
111229686 CDS
T05606
Symbol
ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
sdu
Seriola dumerili (greater amberjack)
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sdu03009
]
111229686 (ighmbp2)
03012 Translation factors [BR:
sdu03012
]
111229686 (ighmbp2)
Enzymes [BR:
sdu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
111229686 (ighmbp2)
5.6.2.5 RNA 5'-3' helicase
111229686 (ighmbp2)
Ribosome biogenesis [BR:
sdu03009
]
Eukaryotic type
Other ribosome biogenesis factors
111229686 (ighmbp2)
Translation factors [BR:
sdu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
111229686 (ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
Viral_helicase1
DEAD
nSTAND3
ResIII
UvrD-helicase
AAA_16
AAA_22
PIF1
IstB_IS21
SLFN-g3_helicase
DnaB_C
Helicase_RecD
NPHP3_N
AAA_28
HEM4
PhoH
ATPase
AAA
Flavi_DEAD
AAA_31
ABC_tran
SRP54
AAA_18
Zot
AAA_25
AAA_33
AAA_7
NTPase_1
Motif
Other DBs
NCBI-GeneID:
111229686
NCBI-ProteinID:
XP_022611831
LinkDB
All DBs
Position
Unknown
AA seq
997 aa
AA seq
DB search
MAVEQFVSKTLELLQEEREAEIEETRLWQENISLKDLQNKGVCLLKLQIGSQSTGLYGRT
VVILEPRKHLGFSSLPSNSFGPGDIVGLYDTGGCTADSQIATGIVTRVSQASISVAFDDS
KDGLSFDTDALYILLKLANDVTYKRMKNALNALNRYSNGTAANLISVLFGDTKPSSQSQP
NEVGFFNLNLDDSQREAVSFALSQRELAVIHGPPGTGKTTTVVEIILQAVKQGQKVLCCA
SSNVAVDNLVERLARCKAKVLRLGHPARLLESIQKHSLDAILAQSDNANIITDIRKDIDK
AFMGMKKAHDKGERVNFRREIGELRKELKTREATAIAQILKSADVVLSTNTGACDDGPLK
FLPAEHFDWVVIDECAQALESSCWIALLKARKCILAGDYKQLPPTIKSRTAASKGLSLSL
MERLIQMYGDSVVRMLTVQYRMNSAIMEWASKEMYQGRLTAHSSVERHLLKDLPGVTCVE
ETCTPLLLIDTAGCGLSEMEVTDEQSKGNQGEVDIVELHIKALTEAGIKAKDIAVIAPYN
LQVDLLRQKLSTRHPELEIKSVDGFQGREKEAVVLSLVRSNRKGDVGFLAEDRRINVAVT
RARRHIAVVCDTQTVQNHAFLKSLIDHMTEFGEVRTAFEYIQDIVPQNYTRDHKDSKANT
SAAISSSASTKQSVKDQARSKVKQGQKKSSGSSSKENTAGSEKYKKSSASTLTEEQQNKN
RCTEIREQVENFLKDLNQSEIQFPSSFNSHDRLLVHQIAEELGLVHESKGEGKDRCISVS
RPLVSAPAEEPTQAQEEEEGEEEAQEEETNPNPQSEPRSHSPLDLKSLHLERMKREQQKR
EENAQRKKQQNNIPPAQTQSSKKAKGKNRTKAGACDIAAAAAPDDDFDTLINAVKKADSV
CSFVKCKASVLTLGQLCIFCNRQYCLSHHIPEVHGCGDKAKSHARMRISKEGVLYAGSGK
KDKSMDPNKKAYLQRKLDSKLKDMASQRKQKNKEKDS
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atggcagttgaacaatttgtgtcaaagacacttgagcttctacaggaggagagggaagct
gaaattgaggagaccaggctatggcaggagaacatctctctcaaggatcttcaaaataaa
ggtgtttgcttgctgaaactgcagataggaagtcagtccacaggcttgtatggccgcaca
gtcgtcatcctagagccaagaaagcatcttggtttctcatctctaccaagcaacagcttt
ggacctggtgatatagttggattgtatgacactggtggatgcaccgcagactctcagatt
gctacagggatagtgacgagggtcagccaagcttctataagtgtggcctttgatgattca
aaggatggcctcagttttgacacagacgctctttacatccttttgaagttggcaaatgat
gtcacctacaaacgaatgaaaaatgccttgaatgcattaaacagatacagcaatggaaca
gcggccaatctgatcagtgttctttttggagacaccaaaccctcttctcagtcacagcca
aatgaggttggattctttaacttgaacctggatgattcccaaagagaagctgtgtcgttt
gctttgtctcagagagaactggctgtgattcatggacctccgggcactgggaaaaccacc
acagtggtggaaatcattctgcaagcagtcaaacaaggccaaaaggtcctgtgctgtgcc
tcatctaacgtggctgtggataatttagtagagaggttagcccgatgcaaggccaaagta
ctgaggctgggtcaccctgccagactgctggagtccattcagaaacattcactggatgcc
atcctcgcccagagtgacaacgcaaacatcatcactgacatccgtaaagacatcgataaa
gcttttatgggaatgaagaaggcacatgacaaaggcgagcgggtgaatttcagaagagaa
ataggggagctaagaaaagagctgaaaaccagggaagcaacagccattgcccagatccta
aaaagtgctgatgttgttttatcaaccaacacaggtgcttgtgatgacggccctctgaag
ttcctgccagcagagcattttgattgggtggtgatagacgagtgcgcccaggccctggag
agcagctgctggatcgccctgctcaaagcgcgcaagtgcattctggctggagactacaag
cagttaccacctactattaaatcacgaaccgctgcatccaaaggcttgtctctcagtctt
atggagagacttatccagatgtatggggactcagtggtccgtatgctgacagttcagtac
cgcatgaacagtgccatcatggagtgggcctccaaagagatgtaccagggaagactgact
gctcacagctctgtggagagacatttattaaaagatctaccaggagtcacctgtgttgaa
gagacctgcacaccgcttcttctgattgacacagcaggctgtggtctgagtgaaatggag
gtcacagatgagcagtccaaaggcaatcaaggtgaggtagacattgttgaactgcacata
aaggctttgactgaagctgggattaaagctaaagacatagctgttattgccccatacaat
ttacaggtcgatcttctgcgtcagaaactgtctacgaggcatccagagctggagataaag
tccgtagatggatttcagggcagagagaaagaggctgtggtgttgtcattagttcgatcc
aacagaaaaggggacgttggctttctggcggaggacagacggataaatgtggctgttaca
cgtgcaagacgccacattgccgttgtgtgtgacactcaaactgtccaaaatcatgctttc
ttgaagtccctgattgatcatatgactgagtttggtgaagtcagaacagcttttgagtac
atccaagatatcgtgccacagaactacacccgtgaccacaaagacagtaaggctaataca
tctgcagctatcagcagctccgcatctaccaaacaaagtgtcaaagatcaggctcgcagc
aaggtgaagcaagggcagaagaaatcgagtggtagcagcagtaaggaaaacactgctggt
tcagagaagtacaaaaaatcctctgcatcaacactcacagaggaacaacagaacaagaac
agatgcactgagatcagagagcaggtggagaactttctgaaggacttaaatcagagtgaa
atacaattcccatcatcttttaactctcatgaccgcctgctggtccaccagatcgctgag
gagctgggacttgtgcatgagagcaaaggtgaggggaaagacaggtgtatcagtgtgtcc
aggcccctggtttcagcaccagctgaggagccgacacaagcacaagaagaagaagaagga
gaagaagaagcccaggaagaagaaacaaacccaaatccccaaagtgagccgcggtctcat
tctccattagatttgaaaagtttacatttggagcgaatgaagagggagcaacagaaaaga
gaagaaaatgctcaacggaaaaaacagcagaacaatatcccgccagctcagacccagtca
tccaagaaggccaaaggaaagaaccgaacaaaggcgggcgcctgcgacattgctgcagca
gctgctcccgatgatgactttgacacgcttatcaacgctgtcaagaaggccgacagtgtg
tgcagttttgtcaagtgtaaagcatctgtgctaacccttggacagctttgcattttttgc
aacaggcagtactgcctcagtcaccatataccagaggttcacggctgtggagataaagcc
aagtctcatgctcggatgagaataagcaaagaaggcgttctttatgccggcagtgggaag
aaagacaaatccatggatcccaataagaaagcttacctgcaaagaaaactggactctaaa
ctgaaagatatggcatcacagaggaaacaaaagaacaaagaaaaggacagctaa
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