Seriola dumerili (greater amberjack): 111229781
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Entry
111229781 CDS
T05606
Symbol
cspg4
Name
(RefSeq) chondroitin sulfate proteoglycan 4
KO
K08115
chondroitin sulfate proteoglycan 4
Organism
sdu
Seriola dumerili (greater amberjack)
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
sdu00535
]
111229781 (cspg4)
04091 Lectins [BR:
sdu04091
]
111229781 (cspg4)
Proteoglycans [BR:
sdu00535
]
Cell surface proteoglycans
Others
111229781 (cspg4)
Lectins [BR:
sdu04091
]
C-Type lectins
Others
111229781 (cspg4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin_3
Laminin_G_2
Laminin_G_1
Cadherin_4
DAG1
Motif
Other DBs
NCBI-GeneID:
111229781
NCBI-ProteinID:
XP_022611972
LinkDB
All DBs
Position
Unknown
AA seq
2311 aa
AA seq
DB search
MTALHSVVVGAFLTLLLCLPSPGHGESYFGDSYCSLQAFQDVSTFHLSLQIKTSRRSGLL
LLAAGMEDYLFLELQNGKIQARMNLGAGEVTLSSSQGVQLNNLLDHKISLTLRDGKLTMI
IDELFPTFVPMNDNGEQLNIDLGIWLGGTGDLDAPYLSNAIPPFRGCMTEVKFESHQFDI
LSTAFKQCHDTKESCSTEFEAGDGEATSFSTPDSFVSFPTWSGASGAPRVLEFLMKTTIE
DALLVFHPGRESDFIAVGVSKGYLKGMLDLGTGMEILENTQVQLDDDQWHRVKVQISEDS
FVINVDSQSSSLPFDSSEKLDLVGNLYLGGIQGKMKDLFRESGSLNRAEEEITAESFIGC
LGEIKVNQKDRSLQDALVTKDVHVKCEGEDYDYSSYYDAETTTTSPPVRIRYVDMDLNEQ
HCYPTDDTPEIFKNVTKLLDVTPLLVTEGGEGVLDISNLIPTFDLSAAGMRQSDIIFTLQ
NDPWYGLIDMNINTKRTQKFTLLDVVNKKIKYMHDGNERHADQIQLEVVAHSSGYLPECL
TTPREYVLPVEILPVNDIPQISGGEITITENGRTRLSPSLIRIMDSDTRCDELVVTVTSE
SSIEFGYLENGQQPGRSISEFTCRELKDGNIYFVHRGGHAAGITLEVSDGQSVSHSTTLK
LSVTPPHMTIVTNTGLLLSQGSNSSIGIQNLAAIAHPRNGDIMYNLTQPLIYGELQIMTN
DGMYKQVTTFHQSDLDQHRLRYVSTDASDQEDIAVERIHFDTHLGQFSLWNNTFLVKIIP
AQVKVSTLVPLEIEAGEEQTIGITELQAEVQGKTPDPQTIKYIIVKPPTQGSLLLFDKEL
AEGDMFTQKDIVDKTLSFRVRVQRAVDSIDQFQFRVFADDQHSPLYVFPINILGNAEAPV
LTNERLVVLQGGEETLNKNYLWMHSPSSTDFVYRVTQGPKYGRLIRDSPSGQPRFEGAIR
VFSNEDLQLDRLIYKHDGSKTSSDEFHFSAFDQGAESSDIQETVSGVFRVTIQSKNEHVP
VRVVDKVFNVVRHGQRLLTTDVIQFNDDDSGFNDTQIVYAREGILSGNIVSKLNPSMPLF
RFTQADLRDKNILFIHHGADQERFSLQVSDGFHKTTTLLQIQAGEPYLRVVNNTIIVIDH
GSTKTLNTTLLCADTNMDIRDDSEIKFQITSPPSDGRIIVSGIEASAFTQEDLKKRVVSY
EHNYESLRSKDSFSFTVQAQGHSEDGTFRIKIFKQGYLTEPEVITNEVIVSYEGEHTIIN
RDHLKVDQADIVPTEMVFTIKEPPRLGHVVKLTNSSDGTASPVLDYIHSFTQEDVDQGHI
LYVSASIQGNDAFTVDVSNGFTTVEDLKISVNIVPRLIPIQAFNFTVKEGLSRVINAEIV
NISHPFYSSINIEFIVDESPQHGDLRYLDGDEVNYFTWEEVKAGHVYYMHDSTESTEDSF
TLAATAYEIERRSLPVTISVTVIPVNDEPPKLTRNTGLEVLAGEEADITSSMLKTDDADT
PAEELVYHVEVPTNGMVALKEAPEEGILNFTQAQINKGEVIFIHEGEESGGFSFTVTDGE
HTSPLYQFVITARPLTITMVTQEELMVFPGTRQPITSANLGAVTNEDGNEISYSLIRPPR
LGRLILANDRNQYEEITRFSQTQLESGAVFYEHQIPEEPFWVVRDSIELTLSSQPAPDVR
HILPITISYYAAHSNISSQLWKNKGLEMVQGQRKTIDNSILDASNLLASVREANQDDVDV
VFEIKRFPDHGRITLGGQDLPRNAPSFMQEDVNQGKVEYLHDDSGASFDSFSFRARLKSE
GRGASSPADAVFLEEIFNISIKRRGSDPPELVTTDMLLEVLQGSMTILTRKHLNTQDEDS
PPDEVHFKVTKAPKNGRLVDSLTMDPISEFTQEMVNRGQVGFYSDDSLADGVVEFIVSDG
EHQTEPHTLHIGVLARTLFLDKAPEIKVKQGDDETLVTEEMLKASTGGPVEEDILYKITS
VPKYAAVMVDRQPTSAFTQKQIKEGRVSVRFVKSTSPRDSVAFVARSRAANVSSVLNITV
QPLANIAQDPLLPQGTLVQLDRKLLDASPLANKTRTSPTFTVIQQPRGARFVRAGGPGAG
QPVATFSNRDLDEGRVAMEILNPSSGSQGDVTQDEARFLLKAHGVPPAECVLSFQTGPYN
ASGVYPVTLLRIPSDAPVATPASPNWSNNWPRGAAPTTASPGSSSNGKPHVSRRSNFWSI
LIPILVILLLLLLAAILAYYLIRKNKTGKHDVQTAATKPKNGEVAGTETFRKTDPANNIP
MSNMDSKDADPELLQHCRTTNPALKKNQYWV
NT seq
6936 nt
NT seq
+upstream
nt +downstream
nt
atgacagccctgcattcggtcgtggtcggtgcattcctgaccctgctgctctgcctcccc
agccccggtcatggagagtcctactttggggacagctactgcagtttacaagccttccaa
gatgtctccaccttccacctgtcactacagattaagacaagtcggcgaagtgggctgctg
ctcttggctgcaggaatggaggactacctattccttgagctccaaaacgggaaaatacag
gcacggatgaacttgggggctggcgaggtcacgctgtcctcctcccagggagtgcaactg
aacaaccttctggaccacaaaatctcactgacgctgcgtgatggcaaactcaccatgata
attgacgagctgtttccaacatttgttcccatgaacgacaatggagaacagctcaacatt
gacctgggcatttggctcgggggaacaggagacctagacgctccctacctcagcaatgcc
attccccctttccgtgggtgcatgactgaggtcaaatttgagtcccatcagtttgatatt
ctaagcacagcatttaaacaatgccacgacacaaaggaatcctgcagcactgagtttgag
gctggtgatggcgaggcaaccagtttcagcactcctgattcctttgtttctttccccacc
tggagcggggctagtggtgctccgagggtcttggagttcctgatgaaaaccaccattgag
gatgcattacttgttttccaccctggccgagagtcagatttcattgctgttggtgtttca
aaaggctatctcaaaggtatgctggaccttggtactggcatggagatactggagaatacc
caggtgcagctggatgatgatcagtggcatagagttaaggttcagatcagtgaggattct
tttgtcattaatgtagatagccagtcttcctccctcccttttgactcatcggaaaaactg
gacttagtgggaaacctgtatttaggaggcatccaggggaaaatgaaggacctctttcgt
gaaagcgggtccttaaatcgtgcagaggaggaaattacagctgaatcctttattgggtgt
ttgggagagatcaaagttaatcagaaggaccggagcctgcaggatgctttggtgaccaaa
gatgttcatgttaaatgtgaaggagaggactatgattactcaagttattatgatgcagag
acaactacaacttctcctcctgtccgcatccgatatgttgatatggacttgaatgaacaa
cattgctacccaacagacgacacgccagagatattcaagaacgtcacaaaacttcttgat
gtcaccccattgcttgtgaccgaaggtggggaaggtgttctggatatcagcaacttaatc
cctacgtttgacctcagtgctgcaggaatgcgtcagtcagatattatcttcactctccag
aatgatccctggtatggcctgattgatatgaacattaatacaaaacgcacacaaaagttc
actcttctggatgttgtcaataagaaaattaaatacatgcatgatggaaatgaaaggcat
gcagatcaaatccagctggaggtggttgctcacagtagtggttaccttccagaatgtcta
acaactccccgtgagtatgtcctcccagttgaaatacttcccgtcaatgatataccacaa
attagtggaggagaaatcaccatcacagaaaatggcaggactcgtctgagccccagcctt
ataagaatcatggattctgacacccgctgtgatgaactggtagtaactgtaacctcagag
tcttccatcgaatttggttacttagaaaatggtcaacagcccggaagaagcatctcagag
ttcacttgcagggagttgaaggatggaaatatctattttgtacatagggggggtcatgct
gctggaattaccctggaagtgtctgatgggcagtcagtaagccattcaactactttaaag
ttgtctgtgacaccacctcatatgactattgtcaccaacaccggccttctcttgtctcaa
ggaagcaactcgtccataggtattcaaaatctggctgccattgctcatcctcgcaatgga
gatattatgtataacctcacacaaccgctgatatatggagagctacagattatgacaaat
gatggaatgtacaagcaggtcacaactttccatcaatctgatctggatcaacaccgcctt
agatacgtcagcacagacgcaagtgaccaagaagatattgcggtggagcgcattcatttt
gatacccatctggggcagttctccctttggaataacaccttcctagtaaagatcatccct
gcacaagtgaaagtttctaccctggttcctttggagatagaggctggtgaagagcaaaca
attggaatcacagagcttcaggctgaagtacaaggaaaaaccccagatccacaaactata
aaatacatcattgtcaagcctccaacacagggaagtctcctgttgtttgacaaagagcta
gctgagggtgatatgttcacccagaaggacattgtggacaaaactcttagcttcagggtc
cgagtgcaaagagctgtggatagcatagaccagtttcagttcagagtctttgctgacgat
cagcactctcctctctacgtcttcccgattaacatcctcggcaatgcagaggctcctgtt
ttgaccaatgagaggctggttgtcttgcagggcggtgaggagactttgaacaaaaactat
ctttggatgcactcaccaagttctacagattttgtttaccgggtcacgcaaggaccaaag
tatgggcgactgataagggactccccttctgggcagcctagatttgagggggcaattaga
gttttcagtaatgaagacctccaacttgacaggcttatttacaagcatgatggctccaag
actagcagtgatgagttccatttctcagcatttgatcaaggagcagaaagttcagacatt
caggaaacagtgagtggtgttttcagagtaacaatccagtccaagaacgagcatgttccc
gtgagggttgtggataaagtcttcaatgtggtccgccatggtcagcgcctgctaacaact
gatgtcatccagttcaatgatgatgactctggtttcaatgacacccaaattgtctatgct
cgtgagggaatcctctcaggcaatattgtctcaaaattgaatccatcaatgcctcttttc
cgtttcacacaagccgacctgcgagataagaacatcctcttcattcaccacggagcagat
caggaacgcttctcactccaagtgtcggatggcttccacaagaccacgacactacttcaa
atccaggcaggtgagccctacctgcgagtggtgaacaacacaatcattgtcatcgaccac
ggaagcaccaagacccttaacaccaccctgttgtgcgctgacaccaacatggacatcaga
gacgacagcgagatcaagttccagataacttccccacctagtgatggcaggattattgtg
agtgggattgaggcgtcagcattcacccaggaggacctgaaaaaacgtgttgtgtcatat
gagcataattatgagagtctgaggtccaaggactctttcagcttcaccgtccaagcacaa
ggacattctgaagacggcacattcaggattaaaatattcaagcaaggttacctcactgag
cccgaggtgataaccaatgaagtcatcgtttcctatgagggagagcacaccatcatcaac
agggatcatctcaaggtggaccaagctgatattgtgccgacagaaatggtgttcaccatt
aaagagcctcctcggcttggtcatgtggtcaagctgacaaacagttcagacggcacggcc
tcgcctgtcctcgactacattcacagcttcacccaagaggacgttgatcaggggcacatt
ctctatgtgtctgcatccatccagggaaatgatgccttcacagtggatgtcagtaatggt
tttaccacagtggaggatttgaagatctctgtgaacatcgtgcctcggcttatccccatc
caggccttcaactttactgtgaaggaaggcctcagcagagtaattaatgcagagattgta
aacatctcacatcctttctacagctcaataaacatcgaatttattgtggatgagtcacca
cagcacggggacctccgctacctcgatggagacgaagttaattactttacatgggaagag
gtgaaagctggacacgtctactacatgcatgacagcaccgagagcaccgaggacagtttt
acgctcgctgccacggcttatgagattgagcgccggagcctccctgtcaccatctcggtg
actgtcatcccagtcaacgacgagccgccaaaactgacacgtaacacgggcctggaggtt
ctcgctggagaggaagctgatatcacctccagcatgctgaagaccgatgatgctgatacc
cctgcagaggaactggtctaccacgttgaggtgccaaccaatgggatggtggcgttgaaa
gaggcgcctgaggagggcatcctgaatttcacacaggctcagataaacaaaggggaggtc
atctttatccacgagggtgaggagtctggtggtttcagtttcaccgtgacagacggagag
cacacgtctcctctctaccaatttgtcatcacagccaggcctctcaccatcaccatggta
acgcaggaggagctcatggtgttcccaggaacaaggcagcccatcacaagtgccaatctg
ggggctgtaaccaatgaggatggaaatgagataagctactcacttatccgcccacctcgt
ttgggaagactgatcctggccaatgacaggaaccagtatgaggaaattacccgcttctca
caaacacagctggagtcaggagcagtcttctatgagcaccagatacctgaggagcctttt
tgggtggtgagggactccatcgagctcactctgtcatcccagccagctccagatgtgcgt
cacatcctccccatcaccatctcatactacgctgctcacagcaacatctcctcacagctg
tggaagaacaaaggtctggaaatggtgcagggccagaggaagaccattgacaattcgatt
cttgatgcgtccaaccttctggcgagcgtacgtgaggctaaccaagatgatgtggatgtg
gtttttgagattaagcgtttccctgaccacggtcgtataaccctgggtggtcaggacctg
ccccgtaatgccccatccttcatgcaggaagatgtaaatcaaggaaaggtggagtatctc
catgatgactcaggggcctcttttgacagcttctctttcagagctcgtctaaagtctgag
ggtcgtggcgcttcctcacctgccgatgccgtgttcctggaagagatctttaacatctca
atcaaacggcgtggctctgacccccccgaactcgtcactactgacatgctcttggaggtt
cttcaaggctccatgaccatcttgacccggaagcatctcaacacccaagacgaggacagt
ccaccagatgaggtgcacttcaaagtgaccaaagccccgaagaacggtcgactggttgac
tcactcacaatggaccccatctctgagttcacacaagagatggtcaatcgtgggcaggtg
ggcttctacagtgatgacagccttgcagatggcgttgtggagttcattgtgtcagatggt
gaacaccagacagagccgcacacgctccacatcggcgtcctagctcgcaccttgtttctt
gacaaagctcctgagatcaaggtgaaacaaggtgatgatgagaccctggttactgaggag
atgttgaaggccagtactgggggccctgttgaggaggacatcctttacaagatcacaagt
gttcctaagtatgcagctgtcatggtagaccggcagccaacgtcagccttcacccagaaa
cagatcaaagagggccgagtcagtgtccggtttgtgaagtccacttcacctcgagatagt
gttgcctttgtggcgcgcagtcgggccgctaatgtctcctcagtcctcaacatcacagta
cagcctctggccaacatcgctcaggatcctctcttaccccaaggtactctggtccaactg
gacaggaagcttctggatgcatctccactggcgaacaagaccagaacatcccccacgttc
accgtcatccaacagccacggggggctcgttttgtgagggctggaggtcctggtgcaggt
cagccagtggccacgttcagcaacagggacttggatgagggccgcgttgccatggaaatc
ctcaatccctcttctggatcacaaggtgatgtcactcaggatgaggcccgctttctgctt
aaagcccatggggtgcctcctgctgaatgtgtgctgtccttccagacaggcccctacaat
gcttctggggtctaccctgtcactctgttgaggattccttcagacgccccagttgccact
ccagccagccccaactggagtaacaactggccccgtggagccgcccccactacagcatct
cctggttctagctccaatgggaaaccacacgtttcccgacgcagcaacttctggtctatt
ctcatccccatcctggtaatcctcctcctcttgctgctggcagccatcttggcctactac
ctgatccgcaaaaacaagacaggcaagcacgacgtccagacggcagcaaccaaacccaaa
aacggagaggtggccggcacggaaacctttcgcaaaactgacccagccaataacatccct
atgtccaacatggactccaaagacgcagacccagagttgttgcagcactgtcggacgacg
aacccagccttgaaaaagaaccagtactgggtctga
DBGET
integrated database retrieval system
