Seriola dumerili (greater amberjack): 111230050
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Entry
111230050 CDS
T05606
Symbol
lsm1
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111230050 (lsm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdu03019
]
111230050 (lsm1)
Messenger RNA biogenesis [BR:
sdu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111230050 (lsm1)
mRNA degradation factors
5'-3' decay
Lsm complex
111230050 (lsm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
111230050
NCBI-ProteinID:
XP_022612327
LinkDB
All DBs
Position
Unknown
AA seq
133 aa
AA seq
DB search
MNYVPGTASLIDDIDKKHLVLLRDGRTLIGYLRSIDQFANLVFHQTVERIHVGKKFGDIP
RGIFIVRGENVVLLGEIDVDKPSDTVLQQVSIEEILEEQRLQQQAKQETEKVKMQVLKDR
GLSVPKADNLDEY
NT seq
402 nt
NT seq
+upstream
nt +downstream
nt
atgaactacgtaccagggacggcaagcctcattgacgacatcgacaagaagcacctggtg
ctgctccgagatggcaggacactgatcggatacctcagaagcattgatcagtttgctaat
ttagttttccatcagacagttgagcggatccacgtggggaagaaatttggtgacatcccc
agaggaatattcatagtgagaggagagaatgtggtcctgctgggggagatagatgtggat
aagcccagtgacacggtcctgcagcaagtttccattgaagagatcctggaggagcagcgg
ttgcagcagcaagccaaacaggagacggagaaagtcaaaatgcaggtcctgaaggaccga
ggcctctccgtccccaaagccgataacttagacgaatactaa
DBGET
integrated database retrieval system
