KEGG   Seriola dumerili (greater amberjack): 111230306
Entry
111230306         CDS       T05606                                 
Symbol
alyref
Name
(RefSeq) THO complex subunit 4
  KO
K12881  THO complex subunit 4
Organism
sdu  Seriola dumerili (greater amberjack)
Pathway
sdu03013  Nucleocytoplasmic transport
sdu03015  mRNA surveillance pathway
sdu03040  Spliceosome
sdu05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:sdu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111230306 (alyref)
  09122 Translation
   03013 Nucleocytoplasmic transport
    111230306 (alyref)
   03015 mRNA surveillance pathway
    111230306 (alyref)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    111230306 (alyref)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sdu03019]
    111230306 (alyref)
   03041 Spliceosome [BR:sdu03041]
    111230306 (alyref)
Messenger RNA biogenesis [BR:sdu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     111230306 (alyref)
    TREX complex
     111230306 (alyref)
Spliceosome [BR:sdu03041]
 Complex C
  Other components
   EJC/TREX
    111230306 (alyref)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    111230306 (alyref)
SSDB
Motif
Pfam: RRM_1 FoP_duplication
Other DBs
NCBI-GeneID: 111230306
NCBI-ProteinID: XP_022612717
UniProt: A0A3B4UV89
LinkDB
Position
Unknown
AA seq 272 aa
MTDKMDMSLDDIIKQNRQQRGGGRGGRGRGRGGSGGGRGGGAGRLGVGGGGFGVRGGGSG
PMRNRQNLNRARGRPTPYSRPKQLPDKWQHDMFDNGFSGFNGAAGGGGGAGVETGGKLLV
SNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERRADALKAMKQYNGIP
LDGRPMNIQLVTSQIDTQRRPMQGLNRGGGGMNRNRGGGFGGMQRGRGGRGAGGARGKGR
GGGGRGGSSKQQLSAEELDAQLDAYNARMDTS
NT seq 819 nt   +upstreamnt  +downstreamnt
atgaccgataaaatggatatgtctctagacgacattatcaagcagaacaggcagcagaga
ggtggaggccgcggtggaagaggtcgaggccgcggaggctcaggcggtggcagaggagga
ggcgctgggcgtcttggagtcggcggcggaggatttggagtccgaggcggcggatccggc
cccatgaggaaccgacagaacctgaaccgcgctagaggcagaccaacgccttacagcagg
cctaaacagcttccagataagtggcagcatgacatgttcgacaatggcttcagcggcttc
aatggcgctgctggtggtggcggaggagctggtgtggaaactggagggaagctcctcgtc
tccaatctcgactttggagtctcagatgcagacattcaggaactttttgctgaatttggg
actctgaaaaaggctgcagttcattatgaccgatcaggaagaagcctgggaaccgcagat
gtccactttgaaaggagggcagatgccctcaaggccatgaaacagtacaatggcatccca
cttgatgggcggcctatgaacatacagctcgtcacatcacagattgacacacagaggcga
cctatgcagggtctgaacagaggtggtggaggcatgaacagaaatcgtggcggcggcttt
gggggcatgcagagaggccgcggaggacgtggtgcaggcggtgccagaggaaagggtcga
ggcggaggcggccgtggtggtagcagcaagcagcagctgtcagcagaggaacttgacgcc
cagttagatgcctataatgccaggatggacaccagctaa

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