Seriola dumerili (greater amberjack): 111230362
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Entry
111230362 CDS
T05606
Symbol
top3a
Name
(RefSeq) DNA topoisomerase 3-alpha
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu03440
Homologous recombination
sdu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
111230362 (top3a)
03460 Fanconi anemia pathway
111230362 (top3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdu03032
]
111230362 (top3a)
03400 DNA repair and recombination proteins [BR:
sdu03400
]
111230362 (top3a)
Enzymes [BR:
sdu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
111230362 (top3a)
DNA replication proteins [BR:
sdu03032
]
Eukaryotic type
DNA Topoisomerases
111230362 (top3a)
DNA repair and recombination proteins [BR:
sdu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
111230362 (top3a)
FA (Fanconi anemia) pathway
111230362 (top3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_GRF
Toprim
Zn_ribbon_Top1
Zn_ribbon_GRF_2
zf-C2H2_10
Motif
Other DBs
NCBI-GeneID:
111230362
NCBI-ProteinID:
XP_022612781
LinkDB
All DBs
Position
Unknown
AA seq
1045 aa
AA seq
DB search
MLLVHLLGRSLLRPGLQRLWVQRRCLCTAQSGRCPDTPPQQADMIRSRAQIKRVLCVAEK
NDAAKGISEIMSGGRARRREGMSKFNKIYECEYHLFGQNVTVTMTSVSGHLLGLEFKAPF
QKWNSCNPVLLFDAEVEKYCPDNMVQIKRTLEKEVRQCQALVIWTDCDREGENIGFEVID
VCKAVKPNIQVFRAKFSEITPNSIRRACETLMEPDANVSDAVDVRQELDLRIGASFTRFQ
TLRLQKIFPESLANQLISYGSCQFPTLGFVVERFKAIQAFIPETFYKIKVLHEVEEDTVE
FGWKRNRLFNHTACLVLYQICMEDPIATVTSVTSKPKSKWRPLPLDTVEMEKLASRKLRI
SAKETMKIAEKLYTQGFISYPRTETNIFPTNLPLGPLVEQQTQSPVWGTFAQRVLEQPGG
PNPRQGKKSDQAHPPIHPTKYTNTLQGNEGRVYEFIVRHFLACVSQDALGHETVVDIDIA
QEMFSTSGLMIIARNYLDVYPYDRWSAKVIPVYEQGSQFQPSAIEMVDGQTSPPQLLTEA
DLISLMEKHGIGTDATHAEHIETIKSRMYVGLTADQRFLPGELGMGLVEGYNSMGYEMSK
PDLRAELEADLKLVSEGRKDKRSVLRHHIQKYKTVFIESVRKAKKLDEALSPYLGAAQEI
PEAEQRDMEIPLPVRKCPNCGRDMVLKKKREGNSKFLSCVGFPACKTAVWFPDTVLEVSR
DDSICPTCQPRPVHMLKFKFRRGSVPPMMPLEFVGCIGGCDETLREVLDLKYLRAGGGGG
GGGGGGGGGGGGGGGGRGDDPWPPGPRPPRAEPPRAPHSNPRPPLPPVPSWTPQPGPPLG
AGGSGADPNGDAIVCNCGQDALLLTVRKDGPNQGRQFYKCNAGSCNFFLWADQPNQQGAP
QSLGPPRPLPAPRTSQPPRPSLGFRNTFDGGRGQDGGAGAHEIMCNCNEAAVTRTVQKDG
PNKGRMFHTCGKPREQQCSFFQWADENVPPPGGFGGGFSGSGDGGKRARNTIGDAITNKP
PAAKKPRTCGICHMPGHTRVTCPQR
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atgctactagtgcaccttctcgggagatccttgcttcgaccgggactacagcggctctgg
gtccagcggaggtgtctctgtacggcgcagagtggccggtgtccagacacgccaccgcag
caggcagacatgatccggagccgggctcagatcaagcgggttctctgcgtagctgagaaa
aacgatgcagccaaagggatctcagagatcatgtccggcggcagggccaggaggagggaa
gggatgtcaaagtttaataaaatctatgagtgtgaatatcatctctttggtcagaatgtg
acggtaacaatgacttcagtatcaggccatttactgggtctggagtttaaagcaccgttc
cagaaatggaacagttgtaatcccgtgctgttatttgatgctgaggtagagaagtattgt
ccagataacatggtacaaatcaagcggacactagagaaagaggtgaggcagtgccaggcc
ttagtcatctggactgattgtgacagagagggagaaaacattggctttgaagttattgat
gtctgcaaagcagttaagcccaacatacaggtctttcgggcaaagttttctgagataacc
cccaactccatccggagagcttgtgagactctaatggagccggatgccaacgtcagtgat
gctgtggatgtccgtcaggagctggacctgcggataggtgcatccttcactcggttccag
acgcttcgcctgcagaagatctttccagagtctctggccaatcagctgatttcatacggc
agctgtcagtttcccactctgggcttcgttgtggagcgcttcaaagccatccaggctttc
atacctgagactttctacaagatcaaagtgctccacgaggtcgaggaggacactgtagag
ttcggctggaaaagaaaccgtctcttcaaccacacagcttgcctggtgctctaccagatc
tgcatggaggatcccatagcaacagtcacctcagtaaccagcaaacccaagagcaagtgg
agaccgctgcctttggacactgtggaaatggagaaactggcatctcggaagctgagaata
agcgccaaagagaccatgaaaattgcagaaaaactctacacccaagggtttataagctac
ccccgcacagaaaccaacatttttcccacaaacctgcctctcggccccctggtggagcag
cagactcaaagtccggtctgggggacgttcgcccagcgggtgctcgagcagcccgggggt
cccaacccacggcagggcaagaaatctgaccaagcccatccccccatacaccccaccaag
tacaccaatacgctgcagggcaacgaaggacgtgtgtatgagttcattgtccggcacttc
ctggcttgtgtatcccaggatgctttagggcacgagacagtggtggatatagacatagcc
caggagatgttctccacctcgggactcatgatcattgcaaggaactacctggatgtttac
ccgtacgacaggtggagcgccaaggtgattccagtgtacgagcagggctcccagttccag
ccctctgctattgagatggtggacggacagacgagtcctccgcagctgctcaccgaagcc
gacctcatttcgctgatggagaagcacggcattggcacagatgcaacccatgcagagcac
atcgagactattaagagtcgcatgtatgtgggcctgacagctgatcagaggtttctccct
ggagagctcggcatggggctggtggagggttacaactccatgggctatgagatgtccaaa
ccagacctgcgtgctgagttggaggcagatctcaagctggtgtcggagggcaggaaggac
aaacggagcgtgctgcggcaccacatccagaaatacaagaccgtcttcatcgagtctgtc
aggaaggcaaagaagttagacgaagccctgtcgccgtatctgggtgcggctcaggagatc
cctgaagcggagcagcgggacatggagatcccgctgcccgtcaggaagtgccctaactgc
ggtcgggacatggtgctgaagaagaagagggagggaaacagtaagttcctgtcctgtgtg
ggtttcccagcctgtaagacagcagtgtggttccctgacacagtgctggaggtcagcaga
gatgacagcatttgtcccacctgtcagccgcgccccgttcacatgttgaagttcaagttc
cgcaggggcagcgtccctcccatgatgcctttggaatttgttggctgcattggtggatgt
gacgagacgctcagagaggtgctggacctgaaatacctcagagcaggtggaggaggtggc
ggaggaggagggggaggaggaggtggcggaggaggagggggaggaggaagaggagatgat
ccttggccaccaggtccaaggccccccagagcagagccacccagagccccacactccaat
cctcgacctccccttcctcctgtcccctcctggacccctcagcctggacccccgctgggc
gccggcgggagcggtgcagacccaaacggcgacgccatcgtgtgcaactgtggtcaggac
gcacttctcctcactgtacgcaaagacggtcccaaccaagggcgtcagttttacaagtgc
aacgccgggagctgcaacttctttctgtgggccgaccagccgaaccaacagggggcgcca
cagagtctggggcctccgcgtccgctgcctgcaccgaggacctcccagcctccgaggccc
tcgctggggttcaggaacacattcgacggaggcagggggcaggacggaggagctggagca
cacgagataatgtgtaactgtaacgaggcggcagtgacgcgcacagtgcagaaggacggg
ccaaacaagggccggatgtttcacacctgcgggaagccgagagagcagcagtgcagcttc
ttccaatgggctgatgagaacgtacctcctccaggtggttttggtggtggattcagtgga
agtggagacggagggaagagggcgaggaatacaataggagatgccatcaccaacaaacct
cctgctgctaagaaaccccgcacctgcggcatctgccacatgccggggcacacgcgagtc
acctgtccccagcggtga
DBGET
integrated database retrieval system
