Seriola dumerili (greater amberjack): 111230650
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Entry
111230650 CDS
T05606
Name
(RefSeq) collagen alpha-1(XIV) chain-like
KO
K08133
collagen type XIV alpha
Organism
sdu
Seriola dumerili (greater amberjack)
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
sdu00535
]
111230650
Proteoglycans [BR:
sdu00535
]
Extracellular matrix (ECM) proteoglycans
Others
111230650
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Pur_ac_phosph_N
VWA_3
Motif
Other DBs
NCBI-GeneID:
111230650
NCBI-ProteinID:
XP_022613161
LinkDB
All DBs
Position
Unknown
AA seq
1744 aa
AA seq
DB search
MPSEQLELENGRFKNTNALETWRVEFLRKFYEEGFMCKTPAIADIVILVDGSWSIGRINF
RLVRTFLENLVRAFTVEFDKTRIGLAQYSGDPRIEWHLNAHTTKDSVIDAVKNLPYKGGN
TLTGLALTFILENSFKPESGSRPGVPKIGILITDGKSQDDVIPPAQSLREAGIELFAIGV
KNADENELKAIASPPEETHVYNVADFSVMSDIVEGLTKTVCDRVEQLDKQLKGGEPAPPP
TSVAPPRDLVTSEITARSFRVTWTHAPGQVEKYRVVYYPASGGQPEEKVVQGTDNSVELN
YLNSLTEYQVAVFAVYRSSASEALRGSATTLALPTVNDLELFDITHSTMRVRWRTAAGAS
GYMILYAPLTEGDPADEKEVKVSDSVKEVELEGLTPDTEYTVTVYAMYGEEASDPMTSQQ
TTLPLTAAKNLRFSDVDHSSARLTWDSASRKVKGYRVMYVKTNGVQTNEVDVGRVTTWLL
RNLTSLTEYTVGVFAIYDEGQAEAVTDSFTTKTVPDPLDLRSSDISTDSFRVSWQHPASD
VVLYRLTWTPTDGGDSEEAMVNGDVNSYLIKGLSPNTEYEVLLAATYGNEVESDEVILIE
STVERTTTVATTTTTTAAPRYGVRNMRIDEETTFSMRVSWQAVDFRNVRHYRLNYISARG
DRAEETRTVPTGQSSLVLQPLLSDTEYKVSITPVYPDGNGPTAARMGRTLPLSAPKNLRV
SEEWYNRFRISWDVPPSPTMGYRVVYQPLSAPGPALETFVGEDVNTMLIVNLLSGTEYSV
KVIASYTTGSSEALSGRAKTLYLGVTNLNAYQVRMTSVCAQWQLHRHAGAYRVVIESLLN
GQKQETKLSGGASRHCFNNLKPNTQYKISVYAQLQDGTEGPAVTVIEKTLPIPTPAPTRP
PTTTPLPTIPPAKEVCKAAKADLVFLVDGSWSIGDENFLKIIRFLYSTSGALDRIGPDGT
QVAMVQFSDDARTEFKLNSYSDKERLLDAINKISYKGGNTKTGRAIQHVKENIFTVEGGV
RRGIPNVLVVLTDGRSQDDVNKISKEMQMEGYIVFAIGFADADYGELVSIASKPSDRHVF
FVDDLDAFKKIEEKLVTFVCEAATATCPSIPMSGSTTPGFRMMELFGLVENRYSSMSGIS
MVPGTFNTFPCFHLHSDALLAQPTRYIHPEGLPSDYTITLLFRLLPNTPEEPFALWEILN
KNNEPLVGVILDNGGKTLTFFNNDYKGEFQTVTFEGPEIKKLFYGSFHKLHIAISKTSAK
VVIDCKMVAEKTINAAGNITTDGLEVLGRMVRSRGNKDNSAPFQLQIFDIVCSTSWANRD
KCCELPGLRKEVDCPALPKACTCTQDSKGPAGPAGPPGGPGIRGARGDRGEPGPVGPTGP
VGDTGVPGPQGPPGPQGPSGRSIIGPPGAPGERGQKGDAGQQGAQGVPGRAGAQGREGPS
GQRGLPGKDGPPGREGPTGTIGTPGAPGAPGSTGPPGKQGELGPPGPSGGKGEKGERGDL
QSTASVQAIARQVCEQLIQSHMARYNSILNHVPSPPVSIRTVPGPPGEPGRQGTPGPQGE
QGPPGRPGFPGQNGQNGQPGERGQTGEKGEKGSQGAGVQGPRGPPGPPGAQGQGRPGSHG
PSGRPGNPGSTGRPGVPGPVGPAGPPGYCDPNSCVGYNVGVQLPSNVFQNYGEVEEDDPY
RYYQPNYPAPQPVSPDDPALALDDIELRSPGIHRASRSVEGEEERVGPKRRLKRGAKTLP
GLTN
NT seq
5235 nt
NT seq
+upstream
nt +downstream
nt
atgccatcagagcagctggagctggagaacggacggttcaaaaacaccaatgccttggag
acatggagagttgaatttttacgaaaattttatgaagaggggttcatgtgtaagactcca
gccatagctgacattgtgattctggtcgacggctcctggagtatcggtcgcatcaacttc
aggctggtcaggacgttcttggagaatctggtccgggccttcaccgtggagttcgacaag
accaggattggcctggctcagtacagcggagaccccaggattgagtggcatctgaacgct
cacaccaccaaagactctgtgatcgatgctgtgaagaacctgccgtataaaggaggaaac
acactgacaggtttggctctgaccttcatcctggagaacagcttcaaaccagagtctgga
tccagacccggcgttcccaagataggaatcctcatcactgacgggaagtctcaggatgat
gtgatacccccggcgcagagcctcagggaagctgggatagaactgttcgccatcggtgtg
aaaaacgctgacgagaacgagctgaaggccatcgcctctcctcccgaggagactcacgtc
tacaacgtggccgacttcagcgtgatgagcgacatcgtggaaggtctgactaagaccgtc
tgcgaccgagtggagcagctcgacaagcagctcaaagggggagaacccgcccccccgccc
acctctgtggctcctccccgcgacctggtgacgtctgagatcacggctcgcagttttcgg
gtgacgtggacccacgcaccgggccaggtggagaagtaccgcgtggtctactaccccgcc
agtggaggacagccggaagaaaaagtggttcagggcacagacaacagcgtggagctgaac
tacctgaactctctgaccgagtaccaggtggctgtattcgccgtctaccgcagctccgcc
agcgaggccctgagaggaagtgccaccacattggccctgcccacggtgaacgacctggag
ctgttcgatatcactcacagcaccatgagggtccgctggaggaccgctgccggggcttct
gggtacatgatcctttacgccccgctgaccgagggagaccctgcagatgagaaggaggta
aaggtatcagactctgtgaaggaggtggagcttgagggattgactccggacaccgagtac
acggtgacggtttacgccatgtacggagaggaggccagcgaccccatgaccagccagcag
accacactgccactgaccgcggcaaagaacctgcgtttctcagacgtggaccacagctcc
gcccgcctcacatgggactccgcctccaggaaggtcaaaggataccgcgtcatgtacgtc
aagaccaacggagtccaaaccaatgaggtggatgttggccgtgtgaccacctggttgcta
agaaacctgacctccctgacagagtacacagttggtgtttttgccatctatgatgaagga
caagctgaggctgtgactgacagcttcactacaaagactgtcccagacccgctggatctg
aggagcagtgacatctctacagacagcttcagggtgtcatggcaacacccggcctctgat
gtggtgctgtaccgactcacctggacacccactgatggaggagacagcgaggaggcgatg
gtgaatggggatgttaacagctacctgataaaaggactcagccccaacacagagtacgaa
gtcctcctggctgccacctatggaaatgaggtggagagcgatgaggtcatcctcatagag
tccaccgttgaaagaacaaccactgttgctacgacaaccaccaccacagcagctcctcgt
tacggggtgaggaacatgaggattgatgaggaaaccaccttcagtatgcgggtgtcctgg
caggctgtcgacttcagaaacgtccgacattatcgactgaactacatcagcgccagggga
gaccgagcagaggagacgaggacggtgcccactgggcagagcagcctggttctgcagcct
cttctgtccgacaccgagtacaaagttagcatcactcccgtttaccccgatggaaacgga
ccaacagcagcacgaatgggacggacacttcctctctcagctcctaagaacctgcgagtg
tcagaggaatggtataaccgcttcaggatcagctgggacgttccaccttcacccaccatg
ggctacagagtcgtctaccagcctctatctgcccccgggccagctctggagaccttcgtg
ggggaggacgtgaacaccatgctgatcgtcaacctgctgagtgggacggagtacagcgtc
aaggtcatcgcctcctacaccactggatccagcgaagccctgtcagggagggccaagacc
ctgtacctgggcgtcaccaacctgaatgcctatcaggtgaggatgaccagtgtgtgcgcc
cagtggcagctccaccgacacgccggcgcctacagagtggtaatcgagtccctgctcaac
ggtcagaagcaggagacgaagctgagcggaggagccagcagacactgtttcaacaacctg
aagcccaacactcagtataagatcagcgtgtacgcacagctgcaggacgggactgaagga
cccgcagtcacggttattgaaaagacactgcccatcccgaccccggcgccaaccaggccc
cccaccaccaccccactacccacaatccccccagccaaagaagtctgcaaggcggccaaa
gcagacctggtcttcctggtggatggctcctggagtatcggtgatgagaacttcctgaag
attatccgcttcctgtacagcaccagcggagctctggacaggatcgggccggatggcaca
caggtggccatggtccagttcagtgacgacgctcggactgagttcaagctgaactcgtac
agcgacaaggagcgactgctggacgccatcaacaagatttcctacaagggcggaaacacc
aagacgggtcgagctatccagcatgtgaaggagaacatcttcacggtggagggaggagtc
aggaggggaatccccaacgtcctcgtggtcctcaccgatggccgatcccaggacgacgtc
aacaagatttccaaggagatgcagatggaaggttacattgtgttcgccatcggcttcgct
gacgctgactacggcgagctggtgagcatcgccagcaaacccagcgacagacacgtcttc
ttcgtggacgacctggacgccttcaagaagatcgaagagaagctggtgacctttgtgtgt
gaagccgccaccgccacttgtccatctataccaatgagcggaagcacaacaccaggtttc
cgtatgatggagctgtttgggctggtggagaatcggtacagcagcatgtctggcatttcc
atggtacctggcaccttcaacaccttcccctgtttccacttgcacagtgatgcacttctg
gctcagccaaccaggtacatccacccagaggggcttccctccgactacaccatcaccctg
ctgttcagactgctgcccaacactccagaggagccctttgccctctgggagatcctcaac
aaaaacaacgagccgctggtgggagtcatcctggacaacggagggaagactctgacgttc
ttcaacaacgactacaaaggagagtttcagacggtgaccttcgaagggccagaaatcaaa
aaactcttctacggcagcttccataagcttcacatcgcgatcagcaagacgagcgccaaa
gtggtgatcgactgtaagatggtggccgagaaaacgatcaacgcagcgggaaacatcacc
actgatggactggaagttctgggccggatggtccgctccagagggaacaaggacaactca
gcgccgttccagctccagatctttgacatcgtctgcagcacttcatgggccaacagagac
aagtgctgcgaacttcctggtctgaggaaggaggtagactgcccggccttgcccaaagcc
tgcacctgcacccaggacagcaaaggccctgctggccctgctggaccaccaggaggccca
ggaatcagaggagccagaggtgatcgcggagagccaggcccggtggggccaactggtcca
gtaggcgatacaggtgtaccaggacctcagggacccccagggccacaaggacccagtgga
cgctccatcattggacccccaggtgcaccaggagagagagggcagaaaggtgacgccgga
caacaaggagcacagggagttccaggtagagccggagctcaaggcagagagggaccctca
ggacaaaggggactgccgggcaaggacggcccaccgggcagagagggccccacaggaact
atcggaactccaggagcccccggggctccgggaagtacaggccctccaggaaaacaggga
gaactgggacctccgggtccttctggaggcaagggggagaaaggtgaacggggtgacctc
cagtcgacggcttcagttcaggccatcgccaggcaggtctgtgagcagctgatccaaagc
cacatggcgcgctacaactccatcctgaaccatgtaccaagtccaccagtgtccatccgc
actgtgccgggaccccccggagagccgggtcgacagggaactccagggccccagggagaa
cagggacccccaggaagacctggcttcccgggacagaacggacagaacgggcaacctgga
gaaagaggtcaaacaggagagaagggtgagaagggatctcaaggggccggagtccaaggc
cccagaggacctccaggaccccctggtgctcaaggacagggcagacccggcagccatggt
ccatcagggcgacccgggaatcctgggtccactggtcggccgggggtccctggacccgtt
ggccccgcagggcctccgggatactgtgacccgaactcctgtgtgggctataacgttgga
gtccaactgccgtcgaacgtcttccagaactacggcgaggttgaggaggacgacccgtac
cgctactaccagcccaactacccggcccctcagcccgtgtcgcccgacgaccccgcactc
gccttggacgacatcgagctgaggtcccccggcatccaccgcgcctcacggagcgtggag
ggggaggaggagagagtcgggccgaagaggagactaaagagaggagcgaagacgctgccg
ggactaactaactga
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integrated database retrieval system
