Seriola dumerili (greater amberjack): 111230823
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Entry
111230823 CDS
T05606
Symbol
vps13a
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 13A
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
sdu
Seriola dumerili (greater amberjack)
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sdu04131
]
111230823 (vps13a)
Membrane trafficking [BR:
sdu04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
111230823 (vps13a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
Motif
Other DBs
NCBI-GeneID:
111230823
NCBI-ProteinID:
XP_022613385
LinkDB
All DBs
Position
Unknown
AA seq
3269 aa
AA seq
DB search
MVFESLVVDVLNRFLGDYVVNLDSSQLQLGIWGGDAVLTNLEIKENALSQLDIPFKVRAG
HIGRLELKIPWKNLYTQSVEATLDGVYLLIVPTASIKYDAEKEEKQLQEARQRELQRIEE
TKLKAAEQENPTLEKQDTFVEKLVTQVIKNLQVKISNIHVRYEDDVTNPNCPLSFGVSLK
NLSLQTSDENWNPSLLDENSRLFFKLVQLDSLFAYWNVNSTLFSNHSADEALQCLQSSIE
IHSSLPVNHDFIFRPISADAKLRMNPRSDVDFSSPKVDLMVNLSEVAIELNRPQYISILE
LLGSVDMMSRNLPYRKYRPVVHVHRNAHIWWRYVITGILEVNVKPRLVMWSWQHIRHHRQ
MVKRYRELYKTKITSKKPSEELLKQLEEPEKTLDIFNITLARQQAEVEASKAGLRIYRPG
IKMEEEESQGWFSWMWSWGGEADTQTKDSKTGGFDELLTSAEKSKLYTAIGYSETAVNPN
LPKNFEDMKVNFHMERLSVSIKDNKDKNEIIKLTVGELKSTLTQRPGAQAIKLTAQLSLF
EVTGLASNRPAPILLSSRKAATGAGTPLLCILFETNPLDEKANQRLHVESQPLEIIYDAI
TVNSMSAFFMPPDDLQLDELTNATLMKLEQFRDRTATGLMYVIETQKILDLNVNLMASYV
IIPQTGFYNGTQNILLLDLGHFQMSSQSRKHLPQLSVCASNIEDIMSMAYDSFDIQLSSL
QFLYSKPDGDWKMARKQKRSPLHILEPVDLKMDFCRAMVVKDSRMAKYKMSGELPLLSLR
ISDDKLRSVLELVESIPLPESRPAARGPSSTSKARTTKQSFTPQLTPRRPLNLADQRSSL
IFESXEDLFYDAPSSPIGDRPFFPDNPMPLRYADLHKRKSLIKEESQKNMTDFIMKFEIS
EFSVQLCRLSGDQEVTVLHLDIEGLGTELKVRTFDMTSNTYLREICLKCPEYMDSEDKQV
QLITTLDNTEVDLLTLEYIKADKNGPEFKSQHNNTEQLIKVTFSSLDVHLHTEALLNTMN
FLNKLLPESTKKEGGQEELPTIPEEDEAEAEREGEKKEEATVTKKRSSRSTKFADVVTLH
IRADLRCLKVFIRGQKARISEISIEGLVSQVLMRKKEMEVLANLKNIVILDCDKDAFYKK
AVSIADKEVFDFRMVNYTDATEGDAYLDMSKVDTSVSLTVGCIQVIFLNKFVSSILAFIN
NFQEAKEALAEATVQAAEKAASGVKELAERSTRIALNVHFNAPVIFLPQSSSSSNVIVAD
LGLLSVKNRFSKQPCTSDAKIPPVVDIMTVRLTDLKMFRTTYINERFQGETQLLKPVSLD
LEIQRNLSSNWYHSIPDIEITAHLKPMTLILSQDDMIVVLRTLSENLSERSDAVPPPASL
PTTEPSSDSVSNKESQGSGTTGPPSSNTVVIAAVVETQKNSKLKSTLKLDFKFDSMTLVV
YSPNGNEIQLLDSHDEQLKLAEFTLGTISTSVHMFSDSSMKASVRLSACLLDDKRPRIKM
VTPRMMAMRPGAEQNMMVEVNYRQTREGTTLDTVVQDVYLCASMEFLLTVADIFLKATQQ
GFAQVPQHKSSTGAGEKKNMNSSVTSKESTAPPAVVTKTEINVVVRNPEIVFVADLTRAD
APALVMTTQCELIMKSGAERSQMTAVIKDLKVVACPFLREKRRNNVTTVLQPCQVFFQST
QSPTTPQAMEVSINALTLKVSPIIINTVITIQSALTPTAETPEELDSPVPIDLWEKRGWK
ELKLWFLEEEGDEDTRSLVPLIPQGESLQVTIKSICLTLEAGVGHRTIPMLLAKSSFHGD
VTNWSTLINLHSELDLEVHYYNEVMGVWEPLLEPLEDDTKDGFRPWRLELKMKKKPVKYT
FLSDEVDYNVPDYKTVIVISSKDQLNIMLSKCGLAMLGNLGTAFAEAAKQTAECFQKDEA
PFVVKNRLGLPVSVRHSEMFSPISRQSTNCTVELQDGETLGMDYTTTTESDQFSAMISLS
GKDYYIQPTPVGHTSASVIPLIKVGRGMYSVMHKDSGVTRFLVCQIYSVEGSKYIKIRSP
FQIINHFTIPFKVFEGSTCLGTALPTEEFCVPLDSYRSELSLQPITEDDADAQAAEFECS
EGFSYEDVSNKQPETHLQQTCRRRGDQGGVMMINIVPLRDAVTFKHTGGIGENFDVPFVL
HLWPSILLRNLLPYPIAYNLKDSGVSAPEATLNPGHSAQLHTAVINQSRLSLRLLDYLAQ
DWSSEYSLHSDQEEITFIVFQSLRDDDEDDGEGTERKRAELDIAVHVKYDPGQTVIAIHS
PYWMVNKTGRLLQYKADDIHRKHPLDYDMPLLFSFKPRYFLRNNKVRLMISDSELSDDFS
LDTVGSHGDVKCKGRYKDYLVGVKIDTSSFSLTRIVTFVPFYMLVNRTKHSVFICEEGQD
NWTEAQPEQSAIPFWPENDTKRLKIKVEGCLSPPRTIDFTRPENCLLLHLDNSVGGITVD
VNLSDHSATIRFSEYHDGAAPFLIINHTKDQTLQIHQSARTETTWVADELLDLSFSVEED
SSQKITQQEELEAGKAVHYTWAEPTGSRELCWKCGTYSGKLKSEEDLREDMNNDRKLFVI
SFYEGLQRVVLFTEEQRIYKLLCESEKAQLAEQEIILSLKNMGVSLVNNSSSQEVSFIGI
TSSDVVWELKPKKKGRWKTLSTKEAELLENSFKEYIESAPVDYAIVDLENNFQVSFTPNG
MDMRMLQPCDAPLRRHFLPGVKVEYSVSPRQRAYRVQIHRIQIQNQLPGAIFPYVFYPVK
LPKSITMDSEPKPLTDISIVTRAAGHSDISRIKYFKVLIQEMDLKLDLGFLYAILDLFTP
ENASITTSEQEVELFEKDIEYIKTELNHVSAADTSPTSLYEYFHISPIKLHLSFSLSTGG
EDGLKEKRDTELIPVQSLNLLLKSIGATLTDVQDVVFKLAFFELTFQFCTTQQLQWEVIR
HYSKQAIKQMYVLVLGLDVLGNPFGLIRGLSEGVEAFFYEPYQGAIQGPEEFVEGMALGV
KALVGGAVGGIAGAASRITGAMAKGVAAITMDEEYQQKRREAMNKQPSGLREGLTRGGKG
LVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAVARPTGGIIDMASSAFQGIKR
AAETSQDIESLRPPRFIHEDGVIRPYKEREGLGSQMLQKIENGRFAKYRYFAHAKVNDSD
FLMITKRGIFFVTKGTFGQLTCEWQYLFEEFTKEPMIVEDRRLRIEAKERVKSVFHAKEF
GKIINFKTPEIAKWVLAKLEDARDSLPKY
NT seq
9810 nt
NT seq
+upstream
nt +downstream
nt
atggtgttcgaaagcttggtggtagatgtcctgaaccggtttttaggagactacgttgtc
aatcttgacagctcacagctacagcttggcatatggggaggtgatgctgttcttacaaat
cttgaaataaaggaaaatgccttgagtcagcttgacattccttttaaagtgagagccggt
catataggacggctggagcttaagataccatggaagaacctctacacccagtcagtggag
gccacactggatggtgtctatctgctcatagtccccacagcaagtataaagtatgatgca
gaaaaagaggagaaacagctacaggaggctcgtcagagggagctacaacggatagaggag
acaaagctgaaggctgctgaacaagaaaaccccacgttagagaagcaggacacctttgtg
gaaaaacttgtcactcaggtcatcaaaaacctgcaggtcaagatctctaacatccatgta
cggtatgaagatgatgtcaccaatccaaattgtcctttgtcatttggagtgtcacttaaa
aacctcagcctacagacatcagatgagaactggaatcccagtctgttggatgagaattcc
aggcttttcttcaagttggttcaactagacagcttgtttgcctactggaatgtcaattca
accctcttctccaatcacagtgcagatgaggccttgcaatgtcttcaaagcagcatagaa
atccacagctcccttcctgtcaaccatgatttcatttttcgtcccatctcagcggatgct
aaactacggatgaatcccaggtcagatgtggatttctcctcccctaaagtggacctcatg
gtcaatctcagtgaggtggccattgaactcaacagaccccagtacattagcatcttggag
ttgctgggctcagtggatatgatgtcccggaacctgccatacaggaagtacagacctgtg
gtccatgttcataggaacgcccacatatggtggaggtatgtgatcacaggcatcctggag
gtgaatgtgaagccacgtctcgttatgtggtcatggcagcacattcgccaccacaggcag
atggtcaaacgatacagggagctctacaagacaaagatcaccagcaagaaacccagcgag
gagctgctcaaacagctagaggagcctgagaagaccttggatatttttaacatcacattg
gccagacagcaggctgaagtggaggcgagcaaggcaggcctgcgtatttaccgtcctggg
ataaagatggaggaagaggagtctcagggttggttcagctggatgtggagctggggagga
gaggctgatacacaaacaaaagactccaagactggaggttttgatgagctgttaacctct
gctgagaaatccaaactctacactgccattggatacagtgagactgctgttaatcccaac
ctgccaaagaattttgaggacatgaaggtcaacttccacatggagaggctgtctgtgtcc
atcaaagacaacaaggacaaaaatgagatcattaagctgacagtgggagagctcaagtcc
acgctcacacagagacctggagcacaggccatcaaactcaccgcccagcttagtttgttc
gaggtcacaggcctggccagtaaccggcctgcaccaatcctcctttcatcaaggaaggca
gccactggagcaggaaccccgctgctttgcatcctgtttgagaccaacccactggatgag
aaagcaaatcagcgacttcatgtggaatcacaacccctggaaatcatctatgatgcaata
accgtgaacagcatgtcagcattcttcatgcctcctgacgacctgcagctggatgagctc
accaacgcgaccctgatgaaactggagcagtttagagaccgaacagccactgggctaatg
tatgtgatcgaaacacagaaaattctcgacctgaatgtgaacttgatggcgtcctacgtc
atcattccacagactggtttttacaatggcacccagaacatcctactgttggatcttgga
cattttcagatgtccagtcaaagcaggaagcatctgcctcagctgtcagtgtgcgccagc
aacattgaagacatcatgtcgatggcatatgacagctttgacatacagcttagcagcctg
cagttcctttatagcaaaccagacggtgactggaaaatggcccgtaagcagaaacggtca
ccgctccacatcctggagccagtggatctaaaaatggatttctgccgggcgatggttgtc
aaagactcccgcatggcaaagtacaagatgtctggagagcttcctctgctgtctcttcgt
atttctgatgataaacttcgaagtgttctggagctggtagaaagtatcccactgcctgag
agcagacctgctgcacgcggcccatcctccacttcaaaggcaagaacaacaaagcagtcg
ttcacaccccagctcactcccagaagacctctgaacttagctgatcagcgctcctcactc
attttcgagtcataggaagatttgttctacgatgctcccagctctcccatcggtgatcga
ccattcttcccagacaatcccatgccgctgcgctacgcagacttgcacaaaagaaaaagt
ctgatcaaggaagaatctcagaagaacatgactgacttcatcatgaagtttgaaatcagt
gagttttccgttcagttgtgtcgcctatctggggatcaggaggtcacagtgctccacttg
gacatagagggtctgggcactgagttgaaagtacggacctttgacatgacatcaaataca
taccttcgagagatctgcctcaagtgtcctgaatacatggattctgaagacaagcaggtt
cagctgataaccactctggacaacacagaggtcgacttgctcaccctggagtacatcaaa
gctgataagaatggcccagagttcaagtctcaacacaacaatacagagcagctcatcaag
gtgaccttttcatccctggatgttcatctgcatacagaggctctcctcaataccatgaac
ttcctcaacaaactccttcctgaatccactaagaaggagggagggcaggaggaactccct
actatccctgaggaggacgaagcagaggcagagagggagggggagaagaaagaggaagct
actgtaaccaagaaaagaagttcaaggagtacaaagtttgctgatgtggtgactctgcat
atcagagctgatctgcgatgtctgaaggttttcattcgaggacagaaagccaggatctct
gagattagtattgagggtttggtttctcaggttctgatgcggaagaaggagatggaggtt
ctggccaacctgaagaacattgtgatcctagactgtgacaaagatgccttttacaagaag
gcggtgtctatagcagataaggaggtgtttgacttccgcatggtgaactatacagatgca
acagaaggagacgcatatttggacatgtctaaagtcgacacctctgtctcactgacagtg
ggatgcatccaggtcatcttcctcaacaagtttgtctcttctatattggcgttcatcaat
aacttccaggaggccaaagaggccttggctgaggcgacagtccaggctgcagaaaaagca
gcgtcaggtgtgaaggagctggcagagcgaagtactcgaattgctctgaacgtccacttc
aatgcacctgtcatcttcctcccccagtcctcctcttcctccaatgtcattgtagctgac
cttggtctgctgtctgtcaagaaccgtttttccaagcagccatgcacaagtgatgctaag
atcccgcctgttgtggatataatgactgtgagactgactgacctcaagatgttccggacc
acgtacataaatgaaaggtttcagggagagacccaactgctaaagccagtcagcctggac
ttggaaatccagagaaatctttcttccaactggtaccacagcatacctgacatagagatc
actgctcatctaaagcccatgactctgatcctcagccaggatgacatgatagtggtcctg
aggactctgagtgagaacctgtcagagaggtctgatgctgttccacctccagcttctcta
cccaccactgagccctcctctgactcagtatccaacaaagagtcccagggctctggaacc
actggaccacccagtagtaacacagtggtgatagctgctgttgtggagacccagaaaaac
agcaagctgaagagcacactcaagttggacttcaagtttgactccatgacactggtcgtg
tacagccctaatgggaatgagatacagctgttggactcgcatgatgagcagctgaagctg
gcagagtttaccctgggcaccatctccacctccgtccacatgttctccgacagctccatg
aaggcctcagtccgactttctgcctgccttcttgatgacaagagacccagaatcaagatg
gtcacgccaaggatgatggcgatgcgtccaggtgcagaacagaacatgatggtggaggtg
aactaccgtcagacccgtgaaggcaccacgttggacacagtggtgcaggatgtgtacttg
tgtgccagcatggagttcctgctcactgtggcagacatctttctcaaggccacccagcag
ggttttgctcaagtgccacaacataagagcagtactggagcaggagaaaaaaagaacatg
aactcctctgtcacatccaaagagtccactgcccctccagccgtggtgacaaagacagag
attaatgttgtggtgcgtaacccagagattgtgtttgtggccgacctgacgcgtgccgac
gcccccgccctggtgatgaccacacagtgtgaacttataatgaaaagtggggcagagaga
tcacagatgactgctgttatcaaggacctcaaggtagtggcgtgtcccttcttgagagag
aagaggaggaacaatgtgaccacagtgctgcagccatgtcaggtgttctttcagagtact
caatccccaaccacacctcaggctatggaggtctccatcaatgctctcacactgaaggta
tctccaatcatcatcaacacagtgatcaccatccagtcggcactgactcccacagcggag
acccctgaggagctggatagtcctgttcccattgatctctgggagaaacggggctggaag
gagctcaaactctggttcctagaggaggagggggacgaagacacaaggtcactggtccca
ctgataccacaaggagagtcattacaggttaccatcaaatcaatctgtctgactctggag
gctggtgtgggacatcgcactatccccatgcttctggccaagtcctccttccatggagac
gtcacaaactggtcgacactcattaacttacacagcgagctcgacctggaggttcactat
tacaatgaggtgatgggagtatgggaaccgctgctggagccattagaagatgatacaaaa
gacggtttcagaccatggagacttgaactgaagatgaagaagaagccagtgaagtacaca
tttttgtcagatgaagtggattacaatgttccagactataaaacggtcatcgtcatcagc
agtaaagaccagctcaacatcatgctctccaaatgtggactggccatgctgggtaacctg
ggcacggcatttgcagaggctgccaaacagacagctgagtgcttccaaaaggacgaagct
ccgttcgtggtgaaaaaccgcctgggcctgccagtgtctgtccgccacagtgagatgttt
tctcctatcagccggcaaagcactaactgcactgtggagctgcaggatggggaaaccctc
gggatggactatacaaccacaacagaatccgaccagttctcagccatgatctccttgagc
ggaaaggactactacatacagcctactccggtgggccacacctcagccagtgtgatccct
ctgatcaaggtgggcagaggaatgtacagcgtaatgcacaaagactcaggagtcactcgt
ttcctggtttgtcagatttactctgtggagggcagcaagtacatcaagatccgctcacct
ttccagatcatcaatcatttcacaataccattcaaagtttttgaaggatcaacatgtctg
ggtacagcgctccctactgaggagttctgtgtgcctctggattcatataggtctgagctg
agccttcagccaataacagaggatgacgctgacgctcaggctgctgagtttgagtgctca
gagggcttcagttacgaagacgtcagcaacaagcagcctgagacacacctccagcagacg
tgccgtcgccgtggagaccagggtggtgtgatgatgatcaacattgtgccattaagggat
gctgtgacattcaaacacaccggaggtattggggagaacttcgatgtgccctttgtactt
cacctgtggccttccatcctgctacgcaacctactgccttaccccatcgcctacaaccta
aaggacagtggagtctctgcccctgaggccactctgaacccaggtcactctgcccagctt
cacaccgcagtcatcaaccagtcaagactcagtctccggctgctggactacttggctcag
gactggtcttctgagtacagtctccatagtgaccaggaagagatcaccttcatcgtgttc
cagtctttacgggatgatgatgaggacgatggtgaagggacagagaggaagagggctgag
ttagacatcgcagtccatgttaaatatgacccggggcaaacagtgattgctatccactct
ccgtattggatggtgaataagactggcaggttgctgcagtacaaggctgatgatatccac
cgcaaacaccccctggactatgacatgcccctgctcttctccttcaaaccgcggtacttc
ctgagaaacaataaggtccgccttatgatatcagacagtgaactctctgatgatttctcc
ctggatacagttggtagccatggagatgtgaaatgtaaaggcagatacaaagattacctg
gttggtgtgaagattgatacgagcagtttcagtctgacccgcatcgtgacctttgtgccc
ttttacatgctggtcaacagaaccaagcacagtgtcttcatatgtgaggaagggcaggac
aactggaccgaggcacaaccagaacagtcagctattcctttctggcctgagaatgacacc
aagcggctaaagatcaaagtagaaggttgtttatcgcctcctcggactattgacttcaca
cgaccagagaactgcctgttgctgcatttggacaactctgtgggtgggatcactgtcgac
gtgaacctatccgaccactcagccactatccgattctcagagtaccacgatggcgccgcc
cccttcctcatcatcaaccatactaaagaccagactcttcagattcatcagagcgcccgg
acagaaaccacgtgggtggctgacgagctgctcgacctctccttctcagtggaggaggac
agctctcagaagataacgcagcaggaagagctggaggctggaaaagctgtgcactacacc
tgggctgaacccactgggtcccgagagctttgctggaagtgtggtacatacagtgggaaa
ctgaagagcgaggaggacctgcgtgaggacatgaacaacgacagaaaactgttcgtgatc
tccttttatgaaggtctccagcgcgttgtgctgttcaccgaggagcaacgtatctacaag
ctgctgtgtgagagtgagaaggcacagctggctgaacaggaaatcatcctgtcgctaaag
aacatgggcgtgtctctggtcaacaacagcagcagccaggaggtctcctttattgggatc
acaagctctgatgtggtttgggaactaaagcctaagaaaaagggtcggtggaagactctg
agcactaaagaagctgagcttttggagaacagcttcaaagagtacattgaatctgcacct
gtagactatgccatcgtcgacctggaaaacaacttccaggtgtcctttactcccaatggc
atggatatgcggatgctgcagccgtgtgacgctcctctcaggaggcacttcctgcctggg
gtaaaggtcgagtacagcgtctcaccacgacagagagcctaccgtgtccaaatccaccgc
atacagatccagaatcagctgccaggagccatattcccctacgttttttacccagtaaaa
ttgccaaagtctatcaccatggactcagaacccaaacccctgactgatatcagcattgtt
accagagcagcagggcactctgatatctctcgtatcaagtatttcaaggtgttgattcaa
gagatggatctgaagcttgatctgggcttcctgtacgccatcctggacctgttcactcct
gagaacgccagcatcaccacctcagaacaggaggtggaactgtttgagaaggacatagag
tatataaagacagaactaaaccatgtctctgctgctgacacctctcccaccagcctctat
gagtacttccacatttcccccatcaagctgcacctgagtttctctctaagcacgggagga
gaagatggcctgaaggagaagagagatacagaactcatccccgtccagtccctcaacctg
ctgctgaagagtatcggtgcaactctcactgatgtgcaggacgtcgtcttcaagctggcc
ttctttgagttgaccttccagttttgcacaactcagcagctacagtgggaggtcatcaga
cattattctaagcaggctattaaacagatgtatgtgctggtgctgggcctggatgtgctt
ggaaacccctttgggctgatcagaggactgtcagagggagtggaggccttcttctatgag
ccttatcagggagccatccaggggccggaggagtttgttgaaggaatggctcttggggtg
aaggctctggtgggaggagctgtagggggtatagcaggtgcggcctctaggataacaggc
gccatggcaaagggcgtcgctgccataacgatggacgaggaataccagcagaagagacga
gaagctatgaacaaacaacccagtggcctgagagaggggctgaccaggggtggaaaagga
ctggtatctggatttgtcagtgggatcacagggatagttaccaaacctattaaaggagcc
cagaaggagggtgctgcaggcttctttaaaggtgttgggaaaggtctggtcggcgcagta
gccagacccacaggaggcattattgacatggccagcagtgctttccaagggatcaagagg
gcggcagagacttcacaagatattgaatcgctgcgtcctcctcgtttcatccacgaggac
ggtgtcatacgaccatataaggagagggaaggcctcggcagtcagatgctccagaaaatt
gagaatggacgttttgccaagtacagatacttcgctcatgccaaggtcaatgattccgac
ttcctcatgatcaccaaaaggggcatattttttgtgaccaaaggcacatttggccagctg
acctgtgaatggcagtatctgtttgaggagttcaccaaggaaccaatgattgtagaggac
cgcagacttcgcattgaggccaaggagagagtaaagtcagtcttccatgccaaagagttt
gggaagatcataaacttcaaaactcctgagatagccaagtgggttcttgccaaactggag
gatgcaagagacagtttacctaaatactga
DBGET
integrated database retrieval system
