Seriola dumerili (greater amberjack): 111230828
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Entry
111230828 CDS
T05606
Symbol
pdlim5
Name
(RefSeq) PDZ and LIM domain protein 5 isoform X1
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
111230828 (pdlim5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
sdu04990
]
111230828 (pdlim5)
Domain-containing proteins not elsewhere classified [BR:
sdu04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
111230828 (pdlim5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LIM
PDZ
DUF4749
PDZ_6
LIM_FHL2-3_N
Motif
Other DBs
NCBI-GeneID:
111230828
NCBI-ProteinID:
XP_022613395
LinkDB
All DBs
Position
Unknown
AA seq
1034 aa
AA seq
DB search
MSGNYSVTLLGPAPWGFRLQGGKDFNMPLTISRLTDGGKAAKARMAVGDMVLSIDGIATD
GMNHLEAQNKIKSCTDNLSLTLQKASSVPKPPPVAPKDDRSDIIKPVALTHPPPPPYPHP
QSSSPSSAPYNKAPRPYGGCGSESDYTPSQSPFTAFIPSPSSAFTPASSHTSPPPPPPPV
SYPSSSSSSSPGLVPPQPSVYNTPINLYSTENACEVAMGQRRGLLESQGGALPLQFNGVP
RKHVVDTDIHFYHVPTHADASRKRITEDTEDWRPRTGTTQSRSFKILAQITGTEHAQDEE
ADKAKKTNSFTLSSSSYLTDSETNSGKVSDRSPARQAGGSLTTCSALSDTETTPTSHTDQ
PQLQATGSSANQQWQEKDAIIQHDVLISKPDGLLKTQNQDNNISSASHLRLVAIPLSYSS
SVDTFRQIHPNHLSNMNYSLAPMLVPLTCNGSALNQMSSSHAHHYTFSDAQKSNDTSLDA
VFLPDSMPHSFLGPNPVCSHTPASCLPVFSLLPAQTVGVYSSCGSSTLPAQNQAPGASSD
PVRVCRPCTSDVTLSAQPSFQLLPAESSSQVTPLEGSTDLEKFESMNCLTGHDDDNHKLD
NPAAACLRAAQSQFQLSPQHSFPVQVNTHLSHISAHHHALYSTKPVRRELLSSPLDFLPR
AAPSPPPLTHSALKQPMRQTHTKCRSPVQSRTTYPNNPRPPEKAASQSLLDALLITPVIQ
ALPLCLKKKKKRRSVSELHLPKNKRVSWHQSATEEGDPLFSSPVNAVYVFSEESEEPELN
SHDSAVVKTMIKGPAATQGHRPQIGLITPSFGMKGNGSASVPRGPVPARPVPQPHPKDED
TLVQMAEHIPAGTRTPMCAHCNMVIRGPFLVAMGKSWHKEEFNCAHCRTSLADVGFVEEQ
GFVYCEHCYEEFFAPTCSRCQAKILGEVINALKQTWHVYCFLCASCQQPIRNNTFHLEDG
EPYCERDFYSLFGTGCHGCEFPIEAGDKFLEALGYTWHDTCFVCAVCCTALEGQTFFSKK
DKPLCKKHAHTLKI
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcaactacagcgtcactctcttaggccctgccccctggggcttcaggctgcaa
ggagggaaggacttcaacatgcccctcaccatctccaggctgacggatggtgggaaggca
gctaaagctcgtatggctgttggtgacatggttttgtccatcgacggcatcgccacagac
ggcatgaaccacctggaggcccagaacaagatcaagagctgcactgacaacctcagcctc
accctgcagaaggcctccagtgttcccaaaccacctcctgtggcaccaaaggacgacaga
tcagacatcataaaaccagtggctctcacccacccccctcctccaccctatccccaccct
cagtcctccagtccctcctccgccccctacaataaagcccccagaccttacgggggctgc
ggatcagagagcgactacactccatcacaatcaccatttactgctttcatcccatcccca
tcctctgccttcactcctgcgtcctcccacaccagtcctcctcctcctccacctcctgtc
tcttacccatcctcttcctcctcctcctcccctggcctcgttccacctcagccatcagtg
tataacacaccaatcaacctatactccactgagaacgcctgtgaggtggccatggggcag
aggcggggcctattggagagtcagggtggagccttgccactgcagtttaatggagttccc
aggaaacacgttgtggacacagacatccatttttaccatgtgcccactcatgctgatgcc
agcaggaagcgcataacggaggacacagaggactggcgcccccgcactggcaccacccag
tccagatcattcaagattctggctcagatcactggcaccgagcacgctcaagatgaggaa
gctgacaaagccaagaagacaaattccttcactctttcctcttccagttatctcactgac
tctgagacaaacagtgggaaggtcagtgacaggtctccagcacgccaagcaggtggttca
ctcacaacgtgcagcgccctgagtgatacagagaccactcccacatctcacactgaccaa
ccacagctacaggcgacaggctcatcagccaatcagcagtggcaagagaaggatgctata
atccaacatgatgtccttatttccaaacctgacggcctcttaaaaacccaaaatcaagac
aacaacatatcatctgcgtcacaccttcgtctagttgccatcccattatcgtattcaagc
tctgttgacacgtttcgtcaaatacacccaaaccatttgtctaatatgaactattcatta
gcgccaatgctggtacctttaacatgcaatggctcagctctaaaccaaatgtcatcatct
catgcccatcattacaccttttcagatgcccaaaagtcaaatgacacttcccttgatgct
gtgtttttgccagatagcatgccccattcttttcttgggccaaatcctgtttgtagccat
actccagcatcgtgtctgcctgtttttagtttattgcctgcccaaacagtaggagtatat
tcctcatgtggtagcagtactttaccagcacaaaaccaagcaccaggggcctcttctgac
ccagtccgtgtctgtagaccatgtacctcagatgttactctttcagctcaaccaagcttc
caactgctccctgctgaaagcagttcccaggtgacaccactagagggcagcacagatttg
gaaaagtttgagtccatgaactgtttgactggccatgatgatgacaaccataaattagat
aatcctgctgctgcatgtctgagggcagcgcaaagtcagtttcaactttcacctcaacac
agtttcccagtccaagtcaatacccatttatctcatatatcagcacatcatcatgcgctc
tactctaccaaaccagtcaggagagagctcctgtcaagtcctctagacttcttgcccaga
gcggccccctcaccccctcccctcacccatagtgcactcaaacagcccatgcgacagaca
cacactaagtgccgtagtccagtgcagtcaagaacaacttatccgaacaatcctaggcct
cctgagaaagcagcatctcagtccttattggacgccctgcttatcactccagtcattcaa
gctttgcctctttgcctgaagaaaaagaagaagcgtcgtagcgtcagtgagctgcacctg
cccaagaacaagagggtgtcttggcatcagtctgccacagaagagggagaccctctcttc
tcttcccccgtcaatgctgtctatgtctttagtgaggagagtgaggaacctgaactcaac
agccatgactctgcagttgtcaagaccatgatcaaaggacctgctgcaacccagggtcac
cgtccacagattggtttgatcactccgtcttttggtatgaagggcaacggcagtgccagt
gtcccaaggggtccggtcccagcccgacctgtacctcagccccaccctaaagatgaggac
accttggtccaaatggcagaacacatccctgcagggacccgtacgcccatgtgtgcccac
tgcaacatggtcatcagagggccctttttagtagcaatgggtaaatcatggcataaggag
gaatttaactgtgcccactgccgcacatccctggctgatgtgggctttgtggaagaacag
ggatttgtctactgtgaacactgctatgaggagttcttcgctccgacgtgcagccgctgc
caggctaagatattgggggaggtgataaatgccctcaaacagacgtggcatgtgtactgc
tttctgtgcgcttcctgtcagcagccaatcagaaacaacaccttccacctggaggatgga
gaaccatactgtgagcgagacttctacagtttgtttgggactggctgtcatggctgtgag
ttccccattgaggctggagataagttcctggaggccctgggttacacctggcatgacacc
tgctttgtttgtgctgtgtgctgtactgcgctggaaggccagaccttcttctccaagaaa
gacaaacctctttgcaagaaacatgctcacacactgaaaatatga
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