Seriola dumerili (greater amberjack): 111231008
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Entry
111231008 CDS
T05606
Symbol
rb1cc1
Name
(RefSeq) RB1-inducible coiled-coil protein 1 isoform X1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
111231008 (rb1cc1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sdu01009
]
111231008 (rb1cc1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sdu04131
]
111231008 (rb1cc1)
03029 Mitochondrial biogenesis [BR:
sdu03029
]
111231008 (rb1cc1)
Protein phosphatases and associated proteins [BR:
sdu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
111231008 (rb1cc1)
Membrane trafficking [BR:
sdu04131
]
Autophagy
Autophagosome formation proteins
ULK complex
111231008 (rb1cc1)
Mitochondrial biogenesis [BR:
sdu03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
111231008 (rb1cc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ATG11
ATG17_like
TBK1_ULD
ubiquitin
Motif
Other DBs
NCBI-GeneID:
111231008
NCBI-ProteinID:
XP_022613660
LinkDB
All DBs
Position
Unknown
AA seq
1624 aa
AA seq
DB search
MKLYVFQVNNGSTLTFDTDLAVQTVLELKHAIQAKYKIAIQHQVLVVNGGECMAAERRVC
SYSAGTETNPIFLFNKEMILCDRDPTIPKTTFSIESEIQVKVEESLLMPAVFHTVASRTQ
LALEMFEVAKKLCSFCERLVHDEHLQHQGWAAIMANLDDCTLSYQKLLVKFDTSYANYQH
DLEEIKVKLTKLGTAVSVMARIPLLESLTRHSYRESVEKSTSTPEKDSDETEEEKSTDSM
PCTTDAKKPSNLSASISASGTATCEPTADQETNEMTDSGGLRAALLDDDTPDFANPSSFN
VTLLDWINVQDRPNDVESVVRKCFDSINRLDPRIIQPFLADCRDTIAKLDNQNMKAIKGL
EDRLYALDQMIASCKKLVNEQKELAQGFLANQKRAENLKDTSVLPDLCLSHTNQLMIMLN
NHRKLLDIKKKCTTAKQELANNLQVRLKWCCYVMLHADQDGEKLQALLRLLTELIERVRV
VEALSTVPQMYCLAVVEVVRRKMFMRHYREWAYALVKDGKRLYEAEKFKRESFGKLFRKS
FLRNRLFRGLDSWPPTSFCTRKPRRFDDELPDISLEDLQYLKSCCPVEVQPFLMVPTMCD
FEPLNHHVETLHQLVQAAQSVDEMSRTITDLLSEQRASCSQSAQRSTVLTPQSESILGTT
TPMSSKTPSSLSLQGPSCQPLHVPVPAPLEDLSPDSIDAQTFDFETIGHPNMDPVLQQGS
LDLDSLAESPESDFMSAVNEFVIEENMNSPNPISDPTSPDMMVESLYSSVINAIDNKRMQ
DTTTLERENLRITVLKQVIDKYQSAAEESHSNLRSVKDDLYHLRGLVLKEQHDFGFVLRG
MCTEVRNIVDNFSQTHELELKEQHQSELLSVRQELEKQVQTLTEENQVNQNIVRDVQRAM
LELEGLMERKEKELTHLENERERWVETESSQTDRIKNMEQMMSDQAEEIKTLTASKDSLT
SQLENLHFEIERGQQKIRQELEVAEQSHLKELEDRLKQEHKAELETLTKDNQDTLANLAA
ENSAKLSEAADHHTTALREKDNQIKDLVARITELAELRCKVEVELALKESETEEVRLLFE
EAKIQQAEAVKSQVEAETKVLSEELAGIKKQLQVKNEEYEVDLAELRTLMRIEKDHCISE
LVDRHEEETILLRNELSSLQQQAQDAERNHAEQQQKLKQELDQQVDLSEEKEKQLRSFHE
LEQELRTVINKLQAENDLLSKKLEQDRQAVEKDLEKEEATKVASPDAFKELEQEKEDMEK
RLLEKIKQLENELHERRSLKSDEGLSLHAEGRADAGAPLSLDSALQERLQQERASLQSQM
ELLEKKKNEEMQNLKTSLIAEQQTNFNTVLTREKLKKEQIINELTEKLRNVTQQQEKDKA
LIETLSEDRASVMQEKKHLEEELNRLRSTALVSSAFFTSNPSAQEVTEAGAAAAAARALP
VAGACSSESMAECDRLASVAAIRDDEHVDPAVEASMVTVHDNILMSEEKQRILLLERTLH
MKEEENKRLSQRLMSQSMSSVSSRHSDKIAIRDFQVGDLVLIILDERHDNYVLFTVGPTL
YFLHSESLTALDLKPASGTSRRPWVLGKVMEKEYCQAKKAQNRFKVPLGTKFYRVKAVPW
NRKV
NT seq
4875 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgtatgtgttccaggtcaacaatggcagcacattgacatttgacaccgatctt
gctgtccaaactgtattggagcttaaacatgccatccaagccaaatataagattgcaatt
caacatcaagtccttgttgtcaatggaggggaatgtatggctgcagagagacgagtctgc
agttacagtgctggcactgaaaccaaccccatattcctattcaacaaagagatgattttg
tgtgaccgggatccaacgatccccaaaaccaccttctccattgagagtgagattcaggtc
aaggtggaggagtctctactgatgccagctgtctttcacaccgttgcctcacgaacacaa
cttgctctggaaatgtttgaagttgccaagaaactttgctctttctgtgaacgtttggtt
catgatgaacaccttcaacaccaaggctgggctgctattatggctaatctggacgactgc
actctgtcttatcagaagttgcttgtgaaatttgacacctcatatgcaaattatcaacat
gacttggaagaaattaaggtgaaactcacaaagttagggacagcggtttccgtaatggct
aggatacctcttctggaaagtttgacaagacacagttacagagagagcgtagagaagtcc
acttccaccccagaaaaggattcagatgagacagaagaagaaaaatccactgactccatg
ccctgcactaccgatgcaaagaagccctccaatttatcagcatccatctctgcttcgggg
acagccacatgtgagccaactgctgaccaggaaacaaatgaaatgactgacagtggtgga
ctgagagcagcgctattagatgacgacactccagacttcgccaacccgtcctccttcaat
gtcacactattagactggatcaatgtgcaagacagacccaatgatgtggaatcggttgtg
aggaaatgctttgactccatcaataggcttgacccacggatcattcaacctttcctggca
gattgtcgtgacacaattgccaagctcgataatcaaaacatgaaagccatcaaggggctt
gaggacaggttgtatgctctagaccaaatgattgcgagctgtaagaagttggtaaatgaa
cagaaagaacttgctcagggatttttggccaatcagaagcgggctgaaaacctgaaggat
acatctgttctgcctgacttgtgtctgagtcacaccaaccagctgatgatcatgctgaac
aaccacagaaagctgctagacatcaaaaagaagtgcaccactgccaaacaagaacttgca
aacaaccttcaagtccgactcaaatggtgctgctacgtgatgcttcatgcagaccaggat
ggcgagaagcttcaggctctgcttagacttctgacagagctgatcgaaagagtgcgagtg
gtggaggccctcagtactgtgccccagatgtactgcttggcagtggtggaagtcgtcagg
agaaaaatgtttatgcgccactacagagagtgggcttatgcacttgtgaaggatgggaaa
cgactgtatgaggcggagaagttcaaaagggaatcctttgggaaactcttcaggaagtct
ttcctcagaaatcgtttgtttagaggactcgattcatggcctccaacatcattctgtaca
cgaaagcccagaaggtttgacgatgaacttccagacatctcacttgaggacctgcagtac
ttgaaatcatgctgtcctgtagaggtgcagccattccttatggttcccacaatgtgcgac
tttgagcctttaaatcaccacgtagagacgcttcaccagctggtccaagcggcacagagt
gtggatgagatgtctcgaactatcaccgacctgttaagcgaacaaagggcatcctgttct
cagagcgctcagagatcaaccgtgctgaccccacagtctgaaagtatacttgggaccacc
acaccgatgtcctccaaaaccccttcctctcttagccttcagggacccagctgccagcct
ctacatgttcctgtcccagcccctctagaggacctgtccccagacagcattgacgcacaa
acatttgacttcgagaccattggccatccgaacatggatccagtcctgcagcagggctcc
cttgacctggattctctagcagagagccctgagtctgacttcatgtctgctgtcaatgag
tttgtgattgaagagaacatgaactctccgaaccctatcagtgaccccacgagccctgat
atgatggtggagtctctgtactcttcagtgatcaacgctattgacaacaagcgaatgcag
gataccacaacactagagagagagaacttaaggatcactgtcctcaaacaagtaatcgac
aagtaccagtctgctgcagaggagtcccattccaacttaagaagtgtgaaggatgacctc
tatcacttgcgaggtctagtgttaaaagaacaacatgactttggctttgtcctgagggga
atgtgtacagaggtgcgcaacattgttgacaacttctcccagacccacgaactggagttg
aaggagcagcatcaaagcgagcttctctctgttcggcaagagcttgagaagcaggttcag
acactaacggaggaaaatcaagtgaaccagaatattgtcagagacgtccagcgcgcaatg
ctggagctggagggtcttatggagcgcaaagagaaagaacttactcatcttgagaacgag
agagagcgatgggttgaaacagagagtagccagacggataggatcaaaaacatggagcag
atgatgagcgatcaagctgaagagatcaagacactcacagcttcaaaagactccctgacc
agccagctggagaatctgcactttgagattgaacgtggccagcagaagattcgacaggag
ttggaagttgctgagcaatctcacctgaaggagctggaggacagactgaaacaggaacac
aaagctgaactggagacccttaccaaggataaccaggacactctggcaaatctggctgct
gaaaatagtgcaaagttaagtgaggcagctgatcaccataccaccgctcttagagagaag
gacaaccaaatcaaggacttggtggctcgtattactgagctcgcagaactccgctgcaaa
gtagaggtggagctagccctcaaagaatcagagacagaagaggtgaggctcctatttgag
gaggccaagattcagcaggctgaggccgtgaagtctcaggtagaggctgagacaaaagtc
cttagcgaagagctggcaggtatcaaaaaacagcttcaggtaaaaaatgaggagtatgaa
gtggacctagctgagctcaggactctcatgaggatcgagaaggaccactgcatctcagag
ctggtggacagacatgaggaggagactattttgttgcgcaacgagctctcatccctgcag
cagcaagcccaggatgctgagaggaaccatgctgagcagcagcagaaacttaagcaggaa
ttagaccagcaagtggatctaagtgaagaaaaagaaaagcagttgaggagcttccacgaa
ctggagcaagagctgaggacagtcatcaacaaattgcaggcagaaaatgacctgctctct
aaaaaactagagcaggacagacaagcagtcgagaaagatttagaaaaagaagaggccacc
aaggttgcatcaccagatgcctttaaagagttagagcaggagaaggaagacatggaaaag
agactgttagagaaaattaaacaacttgagaatgagcttcatgagagacgatccttaaaa
agtgatgaggggttgtcactgcatgccgaggggcgtgcagatgccggagcacccctgtct
ctggactcagcactacaagagcggctgcagcaggagagggcctccctgcagtcccagatg
gagctcctggagaagaaaaagaatgaggagatgcagaacctcaagacatcacttatcgca
gagcagcagactaatttcaacactgttctaacccgagagaagctgaagaaggagcagatc
atcaatgagctcacagagaagttgcggaacgttacccaacagcaggagaaggacaaagct
ctgatagagacgctgtctgaggaccgggctagtgtcatgcaggagaagaaacacttggaa
gaagagcttaaccgcctgcgcagcactgcactagtctcctctgcctttttcacttctaac
ccgtcagctcaggaggtcacagaggctggagcagcagcagcagcagccagagctctgcct
gtggctggggcctgctcttctgagtccatggcggaatgtgacagactggcctctgtggcg
gccattcgagatgatgaacatgtggatccagcagtggaagccagcatggtgacagtccat
gataatatcctgatgtcagaggagaaacagcggatacttttacttgagaggactttacac
atgaaggaagaagaaaacaagcgcctcagtcaaagactgatgtctcaaagcatgtcgtct
gtgtcgtcacggcattcagacaaaatcgccatcagagacttccaggtaggcgatttggtt
ctcatcatcctggatgaaaggcatgataactacgtgctgttcacagtcggtcccaccctc
tacttcctccactcagagtctctcactgcactggacctcaaaccagcatcggggacctca
agacggccgtgggtacttggaaaggtgatggagaaggaatattgccaggcaaaaaaggcc
cagaacaggttcaaggttccattaggaaccaagttctacagagtgaaagctgttccatgg
aacagaaaagtataa
DBGET
integrated database retrieval system
