Seriola dumerili (greater amberjack): 111231623
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Entry
111231623 CDS
T05606
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111231623
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sdu03041
]
111231623
03009 Ribosome biogenesis [BR:
sdu03009
]
111231623
Enzymes [BR:
sdu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111231623
Spliceosome [BR:
sdu03041
]
Complex A
U2 snRNP components
U2 related factors
111231623
Complex B
111231623
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
111231623
Ribosome biogenesis [BR:
sdu03009
]
Eukaryotic type
90S particles
Helicases
111231623
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
SRP54
Flavi_DEAD
nSTAND3
AAA_29
AAA_25
Motif
Other DBs
NCBI-GeneID:
111231623
NCBI-ProteinID:
XP_022614531
LinkDB
All DBs
Position
Unknown
AA seq
769 aa
AA seq
DB search
MDPGGRMSKRHRLDLGDDYSSSKKRSSDGRDYGRDRERDERSKDRDRDRDRDRDRDRDRG
GDVKSSGLPNSSAACIGGFLKQNPGQQQINPFTNLPHTPRYYEILKKRLQLPVWEYRESF
TDILMRNQSFVLVGETGSGKTTQIPQWCVEMVRSMPGPKRAVACTQPRRVAAMSVAQRVA
DEMDVMLGQEVGYSIRFEDCSSAKTVLKYMTDGMLLREAMNDPLLERYGVIILDEAHERT
LATDILMGVLKEVVRQRSDLKVIVMSATLDAGKFQVYFDSCPLLTIPGRTHPVEIFYTPE
PERDYLEAAIRTVIQIHMCEEDEGDVLLFLTGQEEIDEACKRIKREVDDLGPDVGDIKII
PLYSTLPPQQQQRIFEPPPPNKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKV
YNPRIRVESLLVTAISKASAQQRAGRAGRTCPGKCFRLYTEKAYKTEMQDNTYPEILRSN
LGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFP
LDPQLAKMVIASCEFNCSNEILSITAMLSVPQCFVRPTEAKKVADESKMRFSHIDGDHLT
LLNVYHAFKQNHESTQWCYDNFVNYRSLMSADNVRQQLSRIMDRFSLPRRSTDFSSRDYY
INIRRALVTGFFMQIAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNY
IRTCTDIKPEWLVKIAPQYYEMSNFPQCEAKRQLERIIAKLSSKEYTQY
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atggatcccggtggcaggatgtccaagcgacaccgcttagacttaggtgacgattactca
tcgagtaaaaagaggtcttctgatgggcgtgactacggcagggacagagaacgtgatgaa
cggtcgaaggacagggaccgtgatcgggaccgtgaccgggatcgagaccgtgacagaggc
ggggatgtgaagtcatctgggctgcccaacagctcagctgcatgcattggaggcttcctc
aagcaaaaccccggacagcagcaaatcaaccccttcaccaacctgccccacacgccacgc
tactatgagatcctcaagaagcggctgcagttgcctgtctgggagtacagagagagcttc
actgacatcctgatgcggaaccagtcttttgtgctggtgggagagactggctctggaaag
accacacagatcccccagtggtgtgttgaaatggtgcggtcaatgccgggaccaaagcga
gcagtggcctgcacccagcccaggagggtggcagccatgagtgtcgcccagagggtggct
gatgagatggatgtcatgctgggccaggaggtgggctattccatcaggtttgaagactgc
agctctgccaagaccgtactcaagtacatgacagatgggatgttgctgcgggaggccatg
aacgaccccctactcgagcgctacggtgtcatcatcctggacgaggcccacgagcgcacg
ttagctacagacatcctcatgggggttcttaaggaggtggtccgccagaggtctgacctc
aaggtcattgtcatgagcgccacgctcgacgccggtaagttccaggtgtactttgacagt
tgcccactgctaaccatccccggtcgcacgcacccggtggagattttctacacgccggaa
ccagagcgggactacctggaggcagccatccggactgtgatccagatccacatgtgtgag
gaggatgaaggggacgttctgctcttcctcactggacaagaggaaattgacgaggcctgc
aagcgaatcaagagagaggttgacgacctggggcctgacgtcggtgatatcaaaatcatc
ccattgtactccacgctgcctccacagcagcagcagaggatctttgagccacccccgccc
aataaaccaaacggtgccatcggaaggaaggtcgtcgtgtcaacaaacatagcagagacg
tccctgaccattgacggcgtggtgtttgtaattgatcccggatttgccaagcaaaaggtg
tataacccacggattagagtcgaatcacttttggtgacggccatcagcaaggcttcagcc
cagcagagggcaggtcgtgctggacgaacatgcccaggaaagtgtttccgcctttacaca
gagaaagcgtacaagacagaaatgcaggacaacacatatccagagatcctgaggtctaac
ctgggctccgtggtgctgcagctgaagaagctgggtattgatgacctggtgcactttgac
ttcatggatccaccagccccagagaccctgatgcgagccctggagttgctgaactacctg
gcagcgctcaacgacgacggtgacctgacggagctgggctccatgatggcagagttcccc
ctggacccccagctggccaagatggtcatcgccagctgtgaattcaactgttccaacgag
atcctctccatcactgccatgttgtcagtcccacagtgcttcgtccgacccaccgaggct
aagaaggtggctgacgagtccaagatgcgcttttcccacatcgacggagaccacctgacg
ctgctcaacgtctaccacgccttcaaacaaaaccacgagtccactcagtggtgctatgac
aactttgtcaactaccgctcgctgatgtcagccgacaacgtacgccagcagttgtccagg
atcatggaccgcttcagtctgccgcgacggagcactgacttcagcagcagagactactac
atcaacatccgccgagcgctggtcactggcttcttcatgcagatcgctcacctggagcgc
accggccactacctgacggtgaaggacaaccaagtcgtacagctgcacccttccactgtg
ctggaccacaagcccgagtgggtgctctacaacgagtttgtgctcactaccaagaattac
atccgcacgtgcactgacatcaaaccagagtggttggtgaaaattgccccgcagtactat
gagatgagtaactttccccagtgtgaagcaaagagacagttggagcgtatcattgcaaaa
ctctcatccaaggaatacactcagtactaa
DBGET
integrated database retrieval system
