KEGG   Seriola dumerili (greater amberjack): 111231996
Entry
111231996         CDS       T05606                                 
Symbol
rfc4
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
sdu  Seriola dumerili (greater amberjack)
Pathway
sdu03030  DNA replication
sdu03410  Base excision repair
sdu03420  Nucleotide excision repair
sdu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sdu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    111231996 (rfc4)
   03410 Base excision repair
    111231996 (rfc4)
   03420 Nucleotide excision repair
    111231996 (rfc4)
   03430 Mismatch repair
    111231996 (rfc4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sdu03032]
    111231996 (rfc4)
   03036 Chromosome and associated proteins [BR:sdu03036]
    111231996 (rfc4)
   03400 DNA repair and recombination proteins [BR:sdu03400]
    111231996 (rfc4)
DNA replication proteins [BR:sdu03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    111231996 (rfc4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    111231996 (rfc4)
Chromosome and associated proteins [BR:sdu03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    111231996 (rfc4)
DNA repair and recombination proteins [BR:sdu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     111231996 (rfc4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    111231996 (rfc4)
SSDB
Motif
Pfam: Rep_fac_C AAA RCF1-5-like_lid DNA_pol3_delta2 Rad17 AAA_assoc_2 AAA_16 AAA_22 AAA_30 AAA_11 Gp44_lid DUF815 AAA_24 Mg_chelatase AAA_19 RuvB_N AAA_28 AAA_14 SLFN-g3_helicase Cdc6_lid DNAX_ATPase_lid ResIII AAA_5 AAA_7 wHTH-PRTase_assc
Other DBs
NCBI-GeneID: 111231996
NCBI-ProteinID: XP_022615041
UniProt: A0A3B4VLH7
LinkDB
Position
Unknown
AA seq 359 aa
MQAFLKGATVHSTRPQKDKAAAGPSTEKKAKAVPWVEKYRPKSVDEVAFQEEVVAVLKKS
LEGADLPNLLFYGPPGTGKTSTILAAARELYGPELFRQRVLELNASDERGIQVVREKVKN
FAQLTVAGTRSDGKPCPPFKIIILDEADSMTAPAQAALRRTMEKESRTTRFCLICNYISR
IIEPLTSRCSKFRFKPLANQIQEQRLLQICDKENLKYTKESIAALVKVSEGDLRKAITFL
QSAARLNSDKEITERAVIEIAGVVPPKMIDNLLQICFKGTFEKLEVAVSNMVDEGYAATQ
ILSQLHESIIEQDLSDKEKSAITEKMAVVGKCLADGADEYLQMLSLCSVIMQQASQNSS
NT seq 1080 nt   +upstreamnt  +downstreamnt
atgcaggcctttttgaaaggagcaactgttcactctaccagacctcagaaagacaaggca
gcagcagggcccagtacagagaagaaagccaaggctgttccttgggtagaaaaatacagg
ccaaagtctgttgatgaggtagcctttcaggaggaggtggtagcagtgctgaagaagtct
ctggaaggagcagatcttcccaacttgcttttctatggccctcctggaacaggaaagacc
tccaccatcttagctgctgccagagaactttatggtccagagctgttcagacagagggtg
ctggagctcaacgcctcagatgaacgcggcatccaggttgtcagagagaaggtcaagaac
ttcgctcagctcaccgtggctggaactcgctcagatgggaagccatgtcctccttttaag
atcatcatcctggatgaggcagactctatgacagcaccagctcaggctgcgctcagacgg
accatggagaaggaatcgcgcaccacccgcttctgcctcatctgtaactacatcagcagg
attattgaacctctgacctccagatgttccaagtttcgcttcaaaccccttgccaatcag
atccaagaacaacgcctgcttcagatctgtgacaaggagaacctcaagtacaccaaagag
agtatagcagcattggtgaaggtgtctgagggagacctgcggaaagccatcaccttcctc
cagagcgctgcgcgcctcaacagcgacaaggagatcacagagcgtgctgtcattgaaata
gccggggttgtccctccaaagatgatcgacaacttgctccagatctgcttcaaaggaaca
tttgagaaactggaggttgcagtcagtaacatggtggatgaaggctacgcagccacacag
atcctgagtcagctccatgagtctatcatagagcaggacctgagtgacaaggagaagtca
gccatcacagagaagatggcggttgtgggtaagtgcctggcagatggtgcagatgagtac
ctgcagatgttgagcctctgttcagtcatcatgcagcaggcctcccagaacagcagctaa

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