KEGG   Seriola dumerili (greater amberjack): 111232693
Entry
111232693         CDS       T05606                                 
Symbol
cul4b
Name
(RefSeq) cullin-4B
  KO
K10609  cullin 4
Organism
sdu  Seriola dumerili (greater amberjack)
Pathway
sdu03420  Nucleotide excision repair
sdu04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:sdu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    111232693 (cul4b)
  09124 Replication and repair
   03420 Nucleotide excision repair
    111232693 (cul4b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:sdu04121]
    111232693 (cul4b)
   03400 DNA repair and recombination proteins [BR:sdu03400]
    111232693 (cul4b)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:sdu04147]
    111232693 (cul4b)
Ubiquitin system [BR:sdu04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Cullin
     111232693 (cul4b)
DNA repair and recombination proteins [BR:sdu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      111232693 (cul4b)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      111232693 (cul4b)
Exosome [BR:sdu04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   111232693 (cul4b)
SSDB
Motif
Pfam: Cullin Cullin_Nedd8 SecA_SW DUF3292 TBX2-3_RD
Other DBs
NCBI-GeneID: 111232693
NCBI-ProteinID: XP_022616043
LinkDB
Position
Unknown
AA seq 872 aa
MFPTGLSSPNPPPPPTQEARPAATDVKNDSGNITSPKKRKINGSEREDTTDTISPSPPKT
LNSSSSSSSCSPTPLHIQKKLRFEDSVDFIGLDVKMAEEAAAAAAAAAAAAAASCSNNKS
KAVFLPGGVGHHANGLTKTAGSGTFSNSKPGAAKKLVIKNFKEKPKLPENYTQETWQKLK
EAVEAIQNSTSIKYNLEELYQAVENLCSHKISAKLYKQLRAVCEDHIKAQIDQFREDALD
SVLFLKKIDKCWQDHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRFYIISDLK
VQSKTIDGILLLIERERNGEAIDRSLLRSLLSMLSDLQIYQDSFEQRFLEETNRLYAAEG
QRLMQEREVPEYLHHVNKRLEEEADRVITYLDQSTQKPLIATVEKQLLGEHLSATLQKGL
THLLDENRIQDLSLLYQLFSRVRGGVQVLLQHWIEYIKAFGSTIVINPEKDKTMVQELLD
FKDKVDHIIDICFMKNEKFVNAMKEAFETFINKRPNKPAELIAKHVDSKLRAGNKEATDE
ELEKMLDKIMIIFRFIYGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAF
TSKLEGMFKDMELSKDIMVQFKQYMQCQNIPGNIELTVNILTMGYWPTYVPMEVHLPPEM
VRLQEIFKTFYLGKHSGRKLQWQSTLGHCVLKAEFKEGKKELQVSLFQTLVLLMFNEGEE
FTLEEIKLATGIEDSELRRTLQSLACGKARVLTKIPKSKDVEDGDKFSCNDDFKHKLFRI
KINQIQMKETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLMSEVYNQLKFPV
KPADLKKRIESLIDRDYMERDKENSNQYNYVA
NT seq 2619 nt   +upstreamnt  +downstreamnt
atgtttccaacaggtttatcttcccctaaccccccaccaccgccaacccaggaggctaga
ccagcggctactgatgtcaaaaacgacagcggtaacatcacatctccgaagaagaggaaa
ataaacggctcagagagggaagacactactgacacgatctccccctcgcctcccaagacc
ctgaattcctcttcttcctcctcctcctgctctcccactccgctgcacattcagaagaag
ttgaggtttgaggattcagtggatttcattggactggatgtgaaaatggctgaggaggct
gctgctgctgctgctgccgccgccgccgccgccgccgcttcgtgctctaataacaaaagc
aaagccgtgttcctgcccggtggcgtgggacaccatgcaaacggactgacgaaaaccgca
ggctccggcaccttctccaacagtaaacctggtgctgccaagaaactagtcatcaagaac
ttcaaagaaaagcccaagttgcctgagaactacacacaggagacctggcagaagctcaag
gaagcagtggaggccatacagaacagcacttcaatcaagtacaatctagaggagctctac
caggctgttgagaacctgtgctcccataagatatctgccaaactttacaaacagctgagg
gccgtgtgtgaagaccacatcaaggcgcagattgatcagttcagagaggatgccctggac
agtgtgcttttcctcaagaaaattgacaagtgctggcaggatcactgcagacaaatgatc
atgattaggagtatatttttgtttttggaccgcacctatgttttacaaaattcaatgctg
ccatcaatctgggacatgggtctggagctgttcaggttctacatcatcagtgatctgaag
gtccagagtaaaaccatcgatgggattctgctgctcatagagagggagcgaaatggagag
gcgatagaccgcagtctgctgaggagcctgctgagcatgctctctgaccttcagatttat
caagactcctttgagcagcgctttttggaggaaactaatcgcctgtacgctgcagaggga
cagaggctgatgcaggagagagaggtaccagaatatctccatcatgtcaacaagcgcttg
gaggaggaggctgacagagtcatcacatatctagaccagagcacacaaaaaccactcatt
gctacggtggagaagcagttgctgggtgaacatctcagtgcaactctgcagaaagggctg
actcacctgctggatgagaacagaattcaggatctatctcttctctatcaactcttcagt
cgagtgcgaggtggtgttcaggtcctcctgcaacactggatagagtacataaaggctttt
ggaagcacaatcgtaatcaatccagaaaaagacaaaacaatggtgcaggagttgctggac
ttcaaagataaggtggatcacatcatcgacatctgcttcatgaagaacgagaagtttgtc
aatgccatgaaagaggctttcgaaacattcatcaacaaacggccaaataaacctgcagag
cttattgcaaaacacgtggattcaaagttaagggcaggaaacaaagaggcaacagatgaa
gaactggagaagatgctggataagatcatgattatctttagattcatctatggaaaagat
gtttttgaggccttttacaaaaaggatctggctaagaggttgctggttggaaaaagcgct
tctgttgatgctgaaaaatcgatgttgtcaaagctgaaacacgaatgtggagcagcgttc
accagcaaactggaggggatgttcaaggatatggagctttctaaagacatcatggtgcaa
ttcaaacagtatatgcagtgccaaaacattcctggcaacattgagttgactgtcaacatc
ctcactatgggttactggccaacctatgtcccgatggaagtgcacctgcctcctgagatg
gtgcgactgcaagagatcttcaagaccttctacctgggcaaacacagtggcaggaagctg
cagtggcaatcaacactagggcattgtgtgttaaaagctgaatttaaggagggcaagaag
gagctgcaggtgtcacttttccaaacacttgtgctactgatgtttaatgaaggagaagag
ttcaccctggaggagatcaaactggcaacaggaatagaggacagtgaactgcgccggacg
ctgcagtcacttgcttgtggaaaagcacgagtccttactaaaatcccaaaaagcaaagat
gtggaggatggggacaagttttcctgcaatgatgacttcaaacacaagctcttcaggatc
aaaataaaccagatccagatgaaagaaacggtggaggagcaagccagtaccacagaaagg
gtctttcaggatcgtcagtatcagattgatgctgccattgtgcggatcatgaagatgagg
aagactctgagccataatctcttgatgtctgaggtgtacaaccagctcaagttccccgtc
aagcctgctgacttgaagaagaggatagagtctcttattgacagggactatatggaacgt
gacaaggagaactccaaccagtacaactatgtggcttaa

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