Seriola dumerili (greater amberjack): 111232989
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Entry
111232989 CDS
T05606
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1 isoform X1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu03020
RNA polymerase
sdu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
111232989 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
111232989 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdu03021
]
111232989 (polr2a)
03400 DNA repair and recombination proteins [BR:
sdu03400
]
111232989 (polr2a)
Enzymes [BR:
sdu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
111232989 (polr2a)
Transcription machinery [BR:
sdu03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
111232989 (polr2a)
DNA repair and recombination proteins [BR:
sdu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
111232989 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
111232989
NCBI-ProteinID:
XP_022616426
LinkDB
All DBs
Position
Unknown
AA seq
1966 aa
AA seq
DB search
MHGPPSGDSACPLRTIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFITKIMKVLRCVCFFCSKLLVDSN
NPKIKDILVKSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGMEQQETEEDISKEKGHG
GCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDIILGMDPKF
ARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKMPQPAILKPRPLWTGKQIFSLIIPGHINV
IRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDGTVRNSINQVVQLRYGEDGLAGENVE
FQNLATVKPSHKAFEKKFKFDCTNERALRRMLQEDVVKDVLTNAHVQGSLEREFEKMKED
REILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINTRTPTDLNPLRVVDGVQDLSKKLVI
VNGDDPLSRQAQQNATLLFNIHLRSTLCSRRMTEEFRLTTEAFDWLLGEIETKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGTVPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSP
SYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSP
TSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPK
YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEENN
NT seq
5901 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggcgacagcgcatgcccattgcgcacgatcaagagagttcaa
ttcggcatcatcagcccagatgagcttaaacggatgtcagttactgaagggggaatcaaa
taccccgaaacaacagaaggaggacgccctaaacttggtggccttatggacccaagacaa
ggtgtcatagaaagaactggaagatgtcagacatgtgcaggcaacatgacagaatgtcca
ggccattttgggcacatcgaactggcaaagccagtgttccacgtcggcttcattacaaag
ataatgaaggttctccgatgtgtctgcttcttttgctcaaagttattagtggattcgaac
aatccaaagatcaaagacatcctggtaaaatctaaagggcagcccagaaagcgtttgaca
catgtgtacgagctgtgcaaaggaaaaaatatatgtgaaggaggggaggaaatggataac
aaatttggaatggaacagcaggagacagaggaggacatttccaaggagaagggtcatggt
ggctgcgggcgctaccagccacgtatcagacgctctggcttggagctgtatgctgagtgg
aagcacgttaatgaggattcgcaagagaagaaaatcctgctgagtcccgagcgtgtacac
gagatcttcaagcgcatctcagatgaagaggacatcatcttgggcatggaccccaagttt
gcccggcctgaatggatgattgtaactgtgttgcctgtgcctccgctggctgtgaggcct
gctgtagtcatgcagggatctgctcgcaaccaggatgacttgacccacaagctggctgat
attgttaagatcaacaaccaactgagaagaaacgagcagagtggagcagcagcccacgtc
atagctgaggatgtgaagctgcttcagtttcatgtagccactatggtggacaatgaattg
ccaggccttccaagggcaatgcaaaaatctggccgccctctcaaatccataaaacaacgt
ctaaagggaaaggaggggcgagtcagaggtaacctgatgggcaagcgtgtggacttctcc
gcccgaactgtcatcaccccggaccccaacctgcaaatcgaccaagtgggcgtaccacga
tccatcgcagccaatatgacattcccagaaattgtcacaccctttaacattgacagattg
caagagctggtgcgaagaggcaacagccagtacccaggagccaaatacatcatccgtgac
aatggagacagaattgacctgcgattccaccctaaaccaagtgacctacatctgcagatt
ggctacaaggtggaaagacacatgtgtgatggcgacatcgtcatcttcaaccgacagcct
acactacataaaatgtccatgatggggcacagggttcggattctgccatggtccacattt
cgactcaacctcagtgtcaccaccccatacaacgctgactttgacggggatgagatgaac
ctccacctcccgcagtccctcgagacaagggcagagattcaggagctggccatggtgccg
cgtatgattgttacaccccagtccaacaggcccgtcatgggtattgtgcaggacaccctc
acggctgtgcgcaaattcaccaagagagatgtcttcttagagaggggagaagtcatgaac
ctcctcatgttcctctccacctgggacgggaagatgcctcaaccggccatcctcaagccc
cgtcctctgtggacaggcaagcagatcttcagtctcatcattccgggacacatcaacgtc
atccgcacacacagcacccaccccgacgatgaggacagcggcccttacaagcacatctca
cctggggacaccaaggtcattgtggagaacggtgagttgatcatgggcatcctgtgtaag
aagtctctgggaacctcagctggctccctcgtccacatctcttacctggagatgggccac
gacatcaccagactcttctactccaacattcagactgtggtcaacaactggctgctcatc
gagggtcattccattggtattggtgactccattgctgatgccaagacgtaccttgacatc
cagaacaccatcaagaaagccaaacaggatgtgatagaagtcattgagaaagcccacaac
aacgagctggagccgacccccggtaacacactgaggcagacctttgagaaccaggtgaat
cgtatcctgaacgacgctcgtgacaaaacaggatcctctgcccagaagtctctgtctgag
tacaacaacttcaagtccatggtggtggctggttctaagggttcaaagattaacatctca
caggttattgctgtggtggggcaacagaacgtggagggtaaacgaattccctttggcttc
aaacaccgcacgctgcctcacttcatcaaagatgactacggccctgagagtaggggcttt
gtggagaactcctacctggctggcctgacgccaacagagttcttcttccacgccatggga
ggcagagagggtctgattgacacagctgtcaagaccgctgagactgggtacatccagcgt
cgtctgatcaagtctatggagtctgtgatggtgaagtacgacggcacggtgcgtaactcc
atcaaccaggtggtccagctgcgctacggtgaggacggcctggcaggagagaacgtcgag
ttccaaaatctggcaacagtcaaaccctcacacaaggcctttgaaaagaagttcaagttt
gattgcactaatgagcgagccctgaggcggatgctgcaagaagacgtggtgaaagacgtg
ctgaccaacgcccacgtgcagggctccttggagagggagttcgagaagatgaaggaggac
agggagatccttcgagccattttccccacgggggatagtaaggtggtgctgccgtgcaac
ctggccagaatgatctggaacgctcagaagatcttccgcatcaacactcggaccccaaca
gacctgaatcctctaagagtggtcgacggtgttcaggatttgagcaagaagctggtgatt
gtgaatggcgacgacccgctaagcagacaggcccagcagaacgccaccctgctcttcaac
atccacctgcgctctacgctctgctccagacgcatgacggaggagttccgccttaccacc
gaggctttcgactggctgctgggagagattgagaccaagttcaaccagtccattgcccac
ccaggtgaaatggttggtgctctggctgctcagtcgctgggagagccagccacccagatg
accctgaacactttccattacgccggtgtgtcagccaagaacgtcacactcggtgtgcct
cgtctaaaggagttgatcaacatctctaagaggcccaagacgccctcgctgactgttttc
ctactgggtcaggcggcacgtgacgctgagagggccaaggacatcctctgtcgactggag
cacaccacactgagaaaagtgacagccaacaccgccatctactatgaccccaaccctcag
aacacagtggtggctgaggaccaggagtgggtgaatgtctactacgagatgcccgacttt
gatgtgacgcgcatttcgccgtggctgctgcgcatcgagctcgaccgcaagcacatgacc
gatcgcaagctgactatggagcagattgcagagaagatcaacgccggttttggagatgat
ctgaactgtatcttcaatgatgacaatgctgagaagctcgttctgcgaatcagaatcatg
aacagcgatgagaacaagttccaagaggacgaggaggtggtcgacaaaatggatgacgat
gtgttcctgaggtgcatcgagtccaacatgctgacagacatgaccctacaaggcattgag
cagatcagcaaggtgtacatgcacttgccgcaaactgacaataagaagaagatcatcatc
acagaggacggtgagttcaaggccctgcaggagtggatccttgagacggacggagtgagt
ctcatgagagtgctcagcgagaaggacgtggaccccgtcaggaccacctccaacgacatt
gtggagatcttcacggtcttgggaatcgaggctgtgcgaaaggctctggagagagagttg
taccacgtcatctccttcgacggttcctatgtcaactaccgtcacttggctctgctctgt
gacaccatgacctgccgcggtcacttgatggccatcacacgtcacggcatcaaccgtcaa
gacacgggaccactcatgaagtgttcctttgaggagacggtggatgtgttgatggaggca
tcgtcccacggtgaaagtgaccccatgaagggtgtgtctgagaacatcatgctcggccag
ctcgccccggctggtacaggctgctttgatttgctcttggatgctgagaagtgtaaatac
ggcatggagatccctactaacatacctggcatcagcgtggccggacccactggtatgttc
tttggcacggtcccgagtcccatgagcggtatgtcacctgccatgacgccgtggaacacc
ggagctacgccagcctacggcgcctggtcccccagtgtcggaagcggcatgacccctgga
gcagcaggtttctctcccagcgcagcatcagatgcaagtggcttctctcctggctactcc
ccggcctggtcccccactcctgggtctccaggttctccaggacctgccagcccatacatc
ccatctccaggtggagccatgtcacccaactactcacccacctccccggcctacgagcct
cgctcccctggaggctatacccctcagagcccgggctactccccaacatcaccctcctac
tcccccacctctccctcttactctcccaccagcccgaactacagtccgacatctccttcc
tactctcccacttctcccagttactccccgacttctccttcctattcgcccacatctcct
tcttattccccaacgtccccgtcttactcccccacctccccgtcttactcccccacctcc
ccctcctactctcccacctcgccgagctacagcccaacatcgccgagctacagcccgacg
tcacccagctactctcccacctctccttcttactcacccacctcaccttcttattctccc
acgtctccatcttactctcccacctccccctcatactcccccacttctccttcctactcg
ccgaccagcccgagctacagccccacgtcaccgaactacaccccgacctcacccagttac
tcccccacctccccctcctactccccaacatcgccctcttactccccaacctcccccaac
tacaccccgaccagtcccaactactctcccacctctccctcgtactccccgacctctcca
tcctactccccttccagtccacgctacaccccgcagtcacccacctacacacccagctca
ccctcatacagccccagctcaccctcctactccccgacctcccccaaatacaccccgact
tccccctcatacagcccaagctccccagagtacactcccacctctcccaagtactcccct
acctcgccaaagtactcccctacatcaccgaagtactcgcccacttctcccacctattcc
ccaacaacaccaaaatacagccccacctccccgacctactcccccacctccccaacctac
acccccaccagccccaaatactcccctacttccccaacttactccccgacctcccccaag
tactcacccacatctcctacgtactcaccaactagtcctaaaggctccacgtacagcccc
acctcccctggatacagccccacctcacccacctacagcccggcaatcagccccgatgac
agcgacgaggagaacaactga
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integrated database retrieval system
