KEGG   Seriola dumerili (greater amberjack): 111233164
Entry
111233164         CDS       T05606                                 
Name
(RefSeq) probable histone deacetylase 1-B
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
sdu  Seriola dumerili (greater amberjack)
Pathway
sdu03082  ATP-dependent chromatin remodeling
sdu03083  Polycomb repressive complex
sdu04110  Cell cycle
sdu04330  Notch signaling pathway
sdu04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:sdu00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    111233164
   03083 Polycomb repressive complex
    111233164
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    111233164
   04350 TGF-beta signaling pathway
    111233164
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    111233164
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:sdu03036]
    111233164
Enzymes [BR:sdu01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     111233164
Chromosome and associated proteins [BR:sdu03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     111233164
   HDAC complexes
    Sin3A-HDAC complex
     111233164
    BRAF-HDAC complex
     111233164
    REST complex
     111233164
    SHIP complex
     111233164
    MiDAC complex
     111233164
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     111233164
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    111233164
  Chromatin remodeling factors
   NuRD complex
    111233164
SSDB
Motif
Pfam: Hist_deacetyl Glypican
Other DBs
NCBI-GeneID: 111233164
NCBI-ProteinID: XP_022616641
UniProt: A0A3B4T7T9
LinkDB
Position
Unknown
AA seq 482 aa
MALSQGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAS
GEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAG
AVKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHG
DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAI
FKPIMAKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYIKSFNLPLLMLGG
GGYTIRNVARCWTYETAVALDCSIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLE
KIKQRLFENLRMLPHAPGVQMQAIPEDAPHPDSGDEDEEDPDKRVSIRAHDKRIACEEEF
SDSEDEAEGQGGGRRNAANHKKAKRVKKEEEKEGEEKKEVKEEEKEEEKMDTSGPKEEVK
TT
NT seq 1449 nt   +upstreamnt  +downstreamnt
atggcgctgtctcaaggaacaaagaaaaaagtttgctattactatgacggtgatgtggga
aactattactatggccagggccatcccatgaaaccccacaggatccgcatgacacacaac
ctcctcctcaattatggactgtacaggaaaatggagatctatagaccacacaaagccagt
ggtgaggagatgacaaaataccacagtgacgactacattaagttcctgaggtccatccga
ccagacaacatgtctgagtacagtaaacagatgcagagattcaatgtcggagaggactgt
ccagtgtttgatggtctgtttgagttttgccagctctcgacaggtggctctgtcgctgga
gcagtgaagctgaacaagcagcagacagatatcgccatcaactgggcaggtggactccac
cacgccaagaagtctgaggcctccggtttctgctacgtcaatgacattgtcctggccatc
ctcgagctgctcaagtaccaccagagggtgttatacatagacattgacatccaccatggt
gatggagtggaggaggccttttacaccacagacagggtcatgactgtctctttccacaag
tatggggagtacttccctggcactggagacctgagagacatcggagctggaaaaggcaag
tactacgcagtaaactacccactaagagacggcattgatgatgagtcctatgaagccatc
ttcaaaccgatcatggctaaagtaatggagatgtatcagccaagtgccgtggtactgcag
tgtggagctgattctctttctggagacagactgggctgcttcaatctcaccatcaaaggc
catgccaaatgtgttgagtacatcaaaagtttcaacctgcctctgctgatgctgggcggc
ggtggctacaccattcgtaatgtggcccgctgctggacttacgaaacagctgtcgccttg
gactgctccatccccaacgagctgccctacaatgattactttgagtactttgggcctgac
ttcaagctgcacatcagcccgtccaacatgaccaaccagaacaccaacgagtacctggag
aagatcaagcagcgtctgtttgaaaacctccgcatgctgcctcatgcccctggtgtccag
atgcaggctatccccgaggatgccccccacccagacagcggggacgaggatgaggaggac
cccgacaagcgcgtctctatccgggcccacgacaagaggatagcctgtgaggaggagttc
tctgactctgaggacgaggccgaggggcagggaggaggccgcaggaacgcagccaaccac
aagaaggcaaaacgagtgaagaaggaggaagagaaggaaggagaggaaaagaaagaagtg
aaagaggaggagaaggaggaagagaagatggacacgtcaggaccaaaagaagaggtgaag
acaacttga

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