Seriola dumerili (greater amberjack): 111233505
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Entry
111233505 CDS
T05606
Symbol
nfkb1
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear factor NF-kappa-B p105 subunit
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu04010
MAPK signaling pathway
sdu04210
Apoptosis
sdu04218
Cellular senescence
sdu04620
Toll-like receptor signaling pathway
sdu04621
NOD-like receptor signaling pathway
sdu04622
RIG-I-like receptor signaling pathway
sdu04623
Cytosolic DNA-sensing pathway
sdu04625
C-type lectin receptor signaling pathway
sdu04920
Adipocytokine signaling pathway
sdu05132
Salmonella infection
sdu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
111233505 (nfkb1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
111233505 (nfkb1)
04218 Cellular senescence
111233505 (nfkb1)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
111233505 (nfkb1)
04621 NOD-like receptor signaling pathway
111233505 (nfkb1)
04622 RIG-I-like receptor signaling pathway
111233505 (nfkb1)
04623 Cytosolic DNA-sensing pathway
111233505 (nfkb1)
04625 C-type lectin receptor signaling pathway
111233505 (nfkb1)
09152 Endocrine system
04920 Adipocytokine signaling pathway
111233505 (nfkb1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
111233505 (nfkb1)
09171 Infectious disease: bacterial
05132 Salmonella infection
111233505 (nfkb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sdu03000
]
111233505 (nfkb1)
Transcription factors [BR:
sdu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
111233505 (nfkb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank
Ank_2
Ank_3
Ank_5
Ank_4
Death
Motif
Other DBs
NCBI-GeneID:
111233505
NCBI-ProteinID:
XP_022617057
LinkDB
All DBs
Position
Unknown
AA seq
978 aa
AA seq
DB search
MAEDDHYLHTTNPIFDMMDPSWEFPHFTAMPQTTSLRTADGPFLQILEQPKQRGFRFRYG
CEGPSHGGLPGASSEKNRKTYPTVKICNYQGPARVVVQLVTALTQFPQLHAHSLVGKQCD
KGICIADLQPKDSSISFPNLGILHVTKKNVAKTLEERMMEAVRMGYNCGVCIHPDIDGLQ
AEVRVPRDLHEHQRSVISSAASLQSKDMDLSVVRLMFTAFLPDSDGGFSRRLEPVVSEPI
YDSKAPNASNLKIVRMDRTAGCVTGGEEVYLLCDKVQKDDIQVRFYEEDDSGLTWEALGD
FSPTDVHRQFAIVFKTPKYRDQNLQKPTSVFVQLKRKSDNETSEPKPFTYHPQIIDKEEV
QRKRQKTLPNFQDFSGHGGGGGGLYRGGGGPAAGGGPGSAGGGGGGYFQGFTTYNYGGGG
GGGGGGGGGGGGGGGGGGGIKHASQDDAADDDGSDPDDDSGSGAVLQDSAQTTGTDVTEK
TEEGGVSVDPEPDTGELSSQVTRRQLEALFQYSVTGDSAYLLVPQRPLMTHRTRMETLGS
TWRFSTASRALKSLTQVVSALPGEEVLNMRNHLYQTPLHLAVITQQKEAVEALLLAGADP
TLTDRHGNTALHLASQQEGGMVQFLLQHRDMRGLLEHSNTAGLCAIHLAVLTNQLSSLRE
LLEGGANVEAQERSCGRTALHLATETDNVSLAGCLLLEGNAKVDCCTFNGSTPLHIAAGR
GSLKLTALLMAAGADPHKENFEPLFFREDECCDGEREDEEEDEGYVPGTTPLNMAATSQV
LELLNGKEYEPKSPPTAFSPPQGDLASLVVEVKQDMCRALESEGCWENLAHSLGLGILNT
AFRLSPSPAKTLLDSYEVSGGTVSELLAGLRSVGDCRALSVLEEALCRSDAIDMPTTNET
TGESLCAPVQDLKWTFGSTAGSATAGWSFPQRNDLMAPPPANLNRGSTIHPSITLHPTTI
SIPPSGRVPSRGRVVSSS
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atggctgaagacgaccactaccttcatactaccaacccgatttttgacatgatggatccg
tcgtgggagtttccacacttcacggcgatgccacagaccacgtctctgaggacagcagac
ggaccgttcctgcagatcctggagcagccgaagcagcgtggcttcaggttcagatacggg
tgtgaaggtccgtctcatggcggtctgccaggagcgtccagtgagaagaacaggaagacc
taccccaccgtcaagatctgtaactaccagggtccggcccgggtggtggtccagctcgtg
acggcgttgacccagttccctcagctgcacgctcacagtctggtgggaaaacagtgtgac
aaagggatctgcatcgcagacctgcagcccaaagactccagcatcagtttcccgaacctg
gggatcctccacgtgacgaagaagaacgtggcgaagactctggaggagaggatgatggag
gccgtgaggatgggctacaactgtggcgtctgtatccacccagatatcgacggcctgcag
gccgaggtccgagtcccccgagacctccacgaacaccagcgcagtgtgatcagcagcgcc
gcgtctctccagtcgaaggacatggacctcagcgtggtgcggctcatgttcacggcgttt
ctccccgacagtgatggaggattctccagacgcctggagcccgtggtgtctgagcccatc
tacgacagcaaggctcccaacgcctccaacctgaagatcgtgaggatggaccgaaccgcc
ggctgtgtgaccggaggggaggaggtctacctgctctgtgacaaagtccagaaagatgat
atccaggtccggttctatgaggaagacgactcagggctgacctgggaggctctgggagat
ttctctcccacagacgtccacagacagttcgccatcgtcttcaagactccaaagtatcga
gaccagaacctgcagaagccgacgtccgtgttcgtgcagctaaagaggaagtctgacaat
gagaccagcgagcccaaacccttcacctaccaccctcagatcatagacaaggaggaggtg
cagaggaagaggcagaagacgctgcccaacttccaggacttcagcggtcatggaggagga
ggaggaggtctgtaccgaggaggaggaggtccagcagcaggaggtggtcctggctctgca
ggaggaggaggaggaggttacttccagggttttactacctataattatggaggaggagga
ggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggcatc
aaacatgcctctcaggacgacgcagcagacgatgacggaagcgacccagacgatgactca
gggtccggggctgtgctgcaggattcagcccagacaacaggcactgatgtcacagagaag
actgaggagggaggggtcagtgtagatccagaaccagacacaggtgagctgtcatctcaa
gtgaccagaaggcagctggaggctctctttcagtactctgtaacaggtgattcagcgtac
ctgctagttccacagcgccccctgatgactcacaggacgaggatggagacactgggctcc
acctggcggttctccacagccagcagggcgctgaagagtctgacgcaggtcgtctctgct
ctgcctggagaggaagtgcttaacatgaggaaccacctgtatcagactcctttgcacctg
gcagtgatcacccagcaaaaggaggcagtggaggcgctgctgttggccggagctgaccca
actctgacagatcgtcatggcaacacagcgctccacctggcgtcccagcaggaaggaggg
atggtccagtttctactacaacacagagacatgagaggactgctggagcacagtaacaca
gcaggtctgtgtgctatccacctggcggtcctgaccaatcagctgtcctctctcagggag
ctcctggagggcggggccaatgtggaggctcaggaacgcagctgtggacggaccgccctc
cacctcgccacggaaactgacaatgtgtcgctggccggctgcctgctgctggagggaaac
gccaaggtggattgctgcacctttaatggctccacccccctccacatcgctgcagggagg
ggctccctcaaactgaccgctctgctgatggctgcaggtgcagaccctcataaagaaaac
tttgagccgctgttcttcagagaggacgagtgctgcgacggagagagggaggatgaggag
gaagacgaaggctatgtcccaggaaccactccgctcaacatggccgccacctcacaggtg
ctggagcttctgaatggtaaagagtacgaaccaaagtctccgcccacagccttcagcccc
ccgcaaggcgacctggcgagtctggttgtggaggtgaagcaggacatgtgtcgcgctctg
gagagtgaaggatgctgggaaaatctggctcacagtctgggtctcgggatcctcaacaca
gccttcagactgagcccctcccccgccaagacactgctggacagctatgaggtatcaggt
gggacggtcagcgagctgctggctggtctcaggtcagtgggcgactgcagagcgctgagt
gtcctggaggaggcgctgtgtcgctccgacgccattgacatgccgacgaccaacgagacg
accggcgagtccctctgtgctccggttcaggatctgaagtggacgttcggatcgacagcg
gggtctgcgacagcggggtggagctttccacagcgtaacgacctgatggctccgcctcca
gctaacctcaacagaggaagcacaattcatccatccatcacccttcatcccaccaccatc
agcatccctccatcaggacgtgtgccctccagaggacgcgtcgtctcttcttcatga
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integrated database retrieval system
