Seriola dumerili (greater amberjack): 111233508
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Entry
111233508 CDS
T05606
Symbol
polr2b
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu03020
RNA polymerase
sdu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
111233508 (polr2b)
09124 Replication and repair
03420 Nucleotide excision repair
111233508 (polr2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdu03021
]
111233508 (polr2b)
03400 DNA repair and recombination proteins [BR:
sdu03400
]
111233508 (polr2b)
Enzymes [BR:
sdu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
111233508 (polr2b)
Transcription machinery [BR:
sdu03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
111233508 (polr2b)
DNA repair and recombination proteins [BR:
sdu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
111233508 (polr2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
111233508
NCBI-ProteinID:
XP_022617060
UniProt:
A0A3B4UWC7
LinkDB
All DBs
Position
Unknown
AA seq
1174 aa
AA seq
DB search
MYDQDEDNQYDEDEDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTAECRSCLENSSRPTSTIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGY
HLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMTS
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtacgatcaggacgaagataatcaatacgatgaagatgaggatgaaatcactccggat
ttgtggcaggaagcctgctggatcgtcatcagctcttattttgacgagaagggtctggtg
cggcagcagctggattcattcgatgagttcattcagatgtcggttcagaggattgtggag
gatgctccgcccatcgacctgcaggctgaagcccagcacacctcaggggaggtggaggag
ccgcctcgttacttgttgaaattcgagcagatctacctgtcgaagcccacacactgggag
agagatggagctccttctcccatgatgcccaatgaagcccgactaagaaacctcacgtac
tcggcccccttgtatgttgacatcacaaagaccataataaaggagggagaggaccagttg
cagacccagcaccagaagaccttcatcggtaagattcccatcatgcttcgctccacctac
tgcctgctgagcggcctgacggatcgagacctgtgcgagctcaatgagtgtccactagat
cctggaggttatttcatcatcaacggctcagagaaggtgctgatcgctcaggagaagatg
gccaccaacacagtctatgtcttcgccaagaaggactcgaagtatgcctacacagctgag
tgtaggtcgtgtttggaaaactcatcccgtcccaccagcaccatctgggtcagcatgatg
gccaggggaggacagggagtgaagaagagtgcgattggtcagaggatcgtatccacgctg
ccttacatcagacaggaagttcccatcatcattgtgtttcgagctctgggcttcgtgtcg
gacagagacatcctggaacacattatctacgactttgacgaccccgagatgatggaaatg
gtgaagccgtctctggacgaagcgtttgtgatccaggagcagaatgtcgcgttgaacttc
atcggttctagaggagcgaaacccggagtgacaaaagaacgaagaatcaaatatgcaaaa
gaagttctgcagaaagaaatgctgccgcacgtcggagtcagcgacttctgtgagaccaag
aaggcttactttttagggtacatggtccacaggttgctgctcgctgctctcggcagacgg
gagctggacgacagagatcactatggcaacaagaggctggacctcgccgggccactgttg
gcttttctgttcagagggatgtttaagaacctgctgaaggagatcaggatttacgctcag
aaattcatagacagaggaaaagactttaacctggagctcgccattaaaaccagaatcatc
tccgatggactcaaatactctctggccaccggaaactggggcgacgtcaagaaggctcac
caggcccgagccggagtgtcacaggtgttgaaccgtctcacctttgcgtccactctgtcc
cacctccgccgagtcaactctccgatcggcagagacggcaaactggcaaaaccccgacaa
ctgcacaacacactgtgggggatggtgtgtccagccgagacgcccgagggtcatgctgtg
ggtctggtcaagaacttggccctcatggcctacatctctgtgggctctcagccatccccc
atcctggagtttctagaggagtggagcatggagaacctggaggagatctcacctgctgcc
atcgcagatgccactaagatctttgtgaacggctgctgggtcggaatccacaaagatccc
gaacagctgatgaacacactgaggaaactgcggcgacagatggacatcatcgtgtccgag
gtgtcgatgatcagagacatcagagaacgtgagatcaggatttacacagatgctgggcga
atctgtcgaccgctgctgatcgtcgagaaacaaaaactactgctgaagagacgacacatc
gaccagctgaaggagagagagtacaacaactacagctggcaggacttggtggcgagcggc
gtggttgagtacattgacactctggaggaggagacggtgatgctcgccatgacccctgat
gacctccaggagaagggcgtggcatactgctccacctacacccactgtgagattcacccg
tccatgatcctcggagtttgtgcctccatcatccccttccctgaccacaaccagtctccc
aggaacacctaccagtctgccatgggtaaacaggccatgggcgtctacatcaccaacttc
cacgtacgaatggacacactggctcacgttttgtactaccctcagaaaccgctggtcacc
acccgatctatggagtacctgcgcttcagagagctgcctgcaggtatcaactccatcgtg
gcgattgcctcgtacacaggatacaaccaggaagactctgtgatcatgaacaggtcggct
gtggatcgaggcttcttcaggtctgttttctatcggtcctacaaagagcaggagtcaaag
aaaggttttgaccaggaggagatttttgagaagccgacacgtgaaacctgtcagggtatg
agacacgccatctatgacaagctggatgacgatggcctgatcgcgcccggagtccgtgtg
tctggtgaagacgtgatcattgggaaaacggtgacactgccagagaatgacgacgagctt
gacagcaccaaccgccgctacaccaagagggactgcagcaccttcctgagaaccagtgag
accggcattgtggaccaggtgatggtgaccctgaaccaggaaggctacaagttctgcaag
atcagggtgcgttcagtccggattcctcagatcggagacaaattcgccagccgacatgga
cagaaaggaacctgtgggatccagtacagacaggaggacatgccgttcacctgtgaggga
atcacacctgacatcatcatcaatcctcacgccatcccgtccagaatgacagtcggccat
ttgatcgagtgtctgcagggcaaggtgtctgcaaacaaaggtgagatcggcgacgcgaca
ccatttaacgacgccgtcaacgtacagaaagtatcgaacctgctgtctgagtacggatac
cacctgaggggaaatgaggttctgtataacggtttcacggggaggaagctgacctctcag
atcttcatcggcccaacgtattatcagcgtctgaagcacatggtggatgacaagatccac
tcgagggcccggggccccgtccagatactcaacaggcagccgatggagggacgatcacgt
gatggcggtctgcggttcggggagatggagcgtgactgtcagattgctcatggagcggct
cagttcctcagagagcgtcttttcgaggcgtctgatccttatcaagttcacgtctgtaac
ttgtgtggactaatggccatcgccaacacacggacgcacacgtacgagtgtcgaggctgc
cggaacaagacacagatctctttggtccggatgccgtatgcttgtaaacttctcttccag
gagttgatgtcaatgagcatcgcccctcgtatgatgacatcatag
DBGET
integrated database retrieval system
