Seriola dumerili (greater amberjack): 111233563
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Entry
111233563 CDS
T05606
Symbol
chd5
Name
(RefSeq) LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 5
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
sdu
Seriola dumerili (greater amberjack)
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sdu03036
]
111233563 (chd5)
Chromosome and associated proteins [BR:
sdu03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
111233563 (chd5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDII_SANT-like
CHDCT2
Helicase_C
DUF1087
PHD
Chromo
CHDNT
PHD-1st_NSD
ResIII
HDA2-3
PHDvar_NSD
DEAD
AAA_22
PHD_2
Motif
Other DBs
NCBI-GeneID:
111233563
NCBI-ProteinID:
XP_022617130
LinkDB
All DBs
Position
Unknown
AA seq
1956 aa
AA seq
DB search
MKEGKMPKVKKRKKEGGIQARVDSDLEETSEVEEERERPEIGSESESSMYGPTKKKKKKP
KEKKEKKPRKKKRDEEDDDDDDDDGNMKEPKSSSQLMQEWGLEDVQYGFTEDDYKTITNY
KAFSQFLRQASNFVSGFSSCVKLLCSVSVSEDCQSPSLTLSTKTPQPLIAKKNPKIPMSK
MMTVLGAKWREFSANNPFKGASATAVAAAVAAAVETVTVAQPTSVSSSQPSCQLGPIKKA
KTKEGKGPGVRKRSKTVKEVKKKPKPKKTKSKSGQSGKKKKASSSEEDFLEESDFDDISI
HSASVLSDTSGAATKKKARRGRKKRKKEDGDGYETDHQDYCEVCQQGGEIILCDTCPRAY
HLVCLDPELEKAPEGKWSCPHCEKEGIQWEAKDEEEEEEEAPGEEEDDHMEFCRVCKDGG
ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCMCPPLKGKVQKILHWTWGEPPLPAEL
PAGPDGKPNDPLTKPPLKGHPEREFFVKWAGLSYWHCSWVSELQLELYHTVMYRNYQRKN
DMDEPPPYDYGSGEEELNSEKRKSKDPQYAVMEERFYRYGIKPEWMVIHRILNHSFDKDG
DVHYLIKWRDLPYDQCTWEVDDFDIPEYDTHKAFYWDHREQILGEDQRPLVVRKGKKLKD
DHPKREVPPDAPIIDPTIKFEHQPWYINATGGTLHPYQLEGLNWLRFSWAQGTDTILADE
MGLGKTVQTIVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKDS
RAIIRENEFTFEDSAVKSGRKVFRMKKDTPIKFHVLLTSYELITIDQAILGSITWACLVV
DEAHRLKNNQSKFFRILNGYKIYYKLLLTGTPLQNNLEELFHLLNFLTPDRFNNLEGFLE
EFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKFILTR
NFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGNLLVKSSGKL
TLLQKMLKKLKDEGHRVLIFSQMTKMLDLLEDFLEFEGYKYERIDGGITGGLRQEAIDRF
NAPGAQQFCFLLSTRAGGLGINLASADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIY
RFVTRGSVEERITQVAKRKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGTEELFKDEME
AARTMGTHLKAFFSSTGDNKDGEEGNVIHYDDDAISKLLDRSQDATEDTEIQNMNEYLSS
FKVAQYVVKEEDGEEEVEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRK
QVNYNDTTQEDQEWQDDLSDNQSEYSVGSEDEDEDFEERPEGGRRQSRRQLKSEKDKPLP
PLLARVGGSIEVLGFNARQRKAFLNAIMRWGMPPQDAFNSHWLVRDLRGKSEREFRAYVS
LFMRHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLVRKKVQEFEHVNGKLSSPDL
IPIGMELKKLTESVSSDPNTPVPASPVATQPGTPVPPEKTESLLGTAEDKETADQDSKKL
SEHENSSAEPASAPEKAADSEESKASSEEKTGDERDRTESPSTKTESSANTKESALKQTE
LSSSQTSPKMEPCRETEKSSDKGDTDSPLAKTEDKENKPAVADDMKSEYALEGRLNGDKD
TLDEMDESRREDKNGFKAKFMFNIADGGFTELHTLWQTEERAALSSGKMHDIWHRRHDYW
LLAGIVTYPFPALLEQALVIEEQLRRAAYLNMTQDPSHPAMALNTRFAEVECLAESHQHL
SKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLPNMLSRIPPVSARLQMSERSILSR
LTSRGSEPPPQQPFSQGGFGCSQMYSSSFGGGFRGPGGQPMVNYSQMPLGPYVSVSSNGP
PPPTSHLDKKSLDSLRDVATPDLKSGKPSDVICIED
NT seq
5871 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagggaaaaatgcccaaagttaagaagaggaaaaaggagggaggaattcaggcg
agagttgacagcgacctggaggagacctcagaggtggaggaggaacgggagcgtcctgaa
ataggctcggagagcgagagcagcatgtacggccccaccaagaagaagaagaagaaaccg
aaggagaagaaggaaaagaagccccggaagaagaagagagatgaggaagatgatgacgat
gacgatgatgatggtaacatgaaagaacctaaatcatccagccagttgatgcaggagtgg
ggtcttgaagacgttcagtacggcttcaccgaggacgactacaaaaccatcaccaactac
aaggctttcagccagttcctcaggcaagcatctaattttgtgtctggattctcttcctgt
gttaaactgctctgttctgtttctgtttctgaggattgtcagagtccctccctgacactt
tcaacaaaaactccacagcctctcattgccaagaagaacccgaagattcccatgtcaaag
atgatgacggtgttaggggccaagtggcgagagttcagtgccaacaacccgttcaaaggc
gcatctgccaccgctgtggccgccgctgtggccgccgccgtggaaacggttaccgtggca
cagccaacgtctgtcagcagcagccagccgagctgtcagctggggccaatcaaaaaagcc
aaaaccaaagagggaaagggaccaggagttagaaagagaagtaagactgtgaaggaggtg
aagaagaaaccgaagccgaagaagaccaaatcgaagtcgggccaaagtgggaagaagaag
aaagcatcctcgagtgaggaagacttcctggaggagtcggactttgatgacatcagcatc
cacagtgcctccgtgctttctgatacctcgggggccgccaccaagaaaaaggcccgacgt
gggcggaaaaaaaggaaaaaggaagacggcgacggctatgagacagatcaccaggactac
tgtgaagtctgccaacagggtggagagatcatcctgtgtgacacctgtcccagagcgtac
cacctggtctgtctggaccctgagctggagaaggcccccgagggaaaatggagctgtccg
cactgtgagaaagagggaatccagtgggaggccaaagatgaagaggaggaagaggaggag
gctccgggcgaggaagaggatgaccacatggagttttgcagagtgtgtaaagacggagga
gagctgctgtgttgtgacacctgcccgtcttcctaccacatccactgcctcaacccgcct
ctcccggagatcccaaacggggagtggttgtgtcctcgatgcatgtgccctcccctgaaa
ggtaaagtacaaaagattctgcactggacatggggagagcccccactgccagctgaactg
cctgcaggccctgacggaaagccaaatgatccactgaccaagcccccactcaagggccac
ccagagagggagttctttgtgaagtgggctggcctttcatactggcactgctcctgggtc
agcgagctgcagttggagctgtatcacacggtcatgtatcggaactaccagcgaaagaac
gacatggacgagccgccgccgtatgactatggctccggagaagaggagctcaacagcgag
aagaggaagagcaaagacccccagtacgctgtgatggaggagcgcttctatcgctatggc
attaaaccagagtggatggttatccaccggatactcaaccacagcttcgataaggatggc
gacgtgcattacctgatcaagtggagagacctgccctacgaccagtgcacctgggaggtg
gatgatttcgacatcccagagtatgacacccataaagctttttactgggaccacagggag
caaattctaggggaggatcaacgccccctggtggtgaggaaaggaaagaaactgaaagac
gaccatccaaagagggaggtcccccctgatgctcccatcatagatccaaccatcaagttt
gagcatcagccgtggtacattaatgccactggaggaacactgcacccataccagctggag
ggcctgaactggttgaggttctcctgggctcagggcacagacaccatcctggctgatgag
atgggcctggggaagacagtgcaaacaatagtgtttctctactcgctatataaggagggt
cactctaaggggcctttcttggtgagtgcgcccctctccacgatcatcaactgggaaagg
gaatttgaaatgtgggctccagatttctacgtggtgacgtacacgggggacaaagacagc
agggcgatcatcagggagaacgagttcacctttgaagacagcgcagtgaaatcggggcgc
aaggtgttccgcatgaagaaggacactccaatcaagttccatgtgctgctgacatcctat
gagctgattacaatagatcaagccattctgggctccatcacctgggcctgcctggtggta
gacgaggcccacagactgaagaacaaccaatcaaagtttttcaggattctcaacgggtat
aagatctactacaagctgctgctgactgggactcctcttcagaacaacctggaggagctg
ttccacctgcttaactttctcaccccagatcgcttcaataacctggaaggcttcctggag
gagtttgccgatatctctaaagaggaccagatcaagaagctccacgacctccttgggccg
cacatgctcaggaggctgaaagccgatgtgttcaagaacatgcctgcgaagacggagctg
atcgtcagagtggagctcagccctatgcagaagaaatattacaagtttattctgacgcga
aactttgaggctctgaactccaaaggtggagggaaccaagtgtccctccttaacattatg
atggacctgaagaagtgctgcaaccatccctacctgttccccgtggctgctgtggaagct
cctgtattacccaatggttcttatgatggcaacctactggtgaagtcctcaggaaaactg
acactgcttcagaaaatgctgaagaaactcaaagatgaaggacacagagttctcattttc
tctcagatgacaaagatgttggatctgcttgaggattttttggagtttgagggatataaa
tacgaacgtattgatggaggaataactggaggcctaaggcaggaggccattgaccgcttc
aatgcgccgggtgctcagcaattctgcttcttgctttcaacacgagctgggggtcttggc
atcaatcttgcaagcgcagacactgtcatcatctacgactctgactggaatcctcacaat
gacattcaagcgtttagcagagcccaccgtataggccaaaataagaaggtgatgatctat
cgttttgtgacgcgaggctcggtggaggagcggataactcaggtggcgaagaggaagatg
atgctgacccatctggtggtgcggcctggcctgggctccaaaaccggctccatgtccaaa
caagagctggacgacatcctcaagtttggcacagaggagcttttcaaagacgaaatggag
gcagctcgaaccatgggtacccacttaaaggctttcttctcatcaacaggtgacaacaaa
gacggcgaggagggcaacgtgatccactatgatgacgacgccatctcgaagctgttggac
cgcagccaggacgccactgaagacacggagattcagaacatgaacgagtacctgagctcc
ttcaaggtggctcagtatgtggtgaaagaagaggatggagaggaagaggtggagcgggag
atcatcaagcaggaggagaacgtggatccagactactgggaaaaactcctccgccaccac
tacgagcagcagcaggaggatctggctcgcaacctgggcaaaggcaaacgcatccggaag
caggtcaactacaacgacacgacccaggaggatcaagaatggcaggatgatctttcagac
aatcagtcggagtactctgtggggtccgaggacgaggacgaagatttcgaggagaggcct
gaaggtgggcgcaggcagtctcgtcggcagctgaaaagcgagaaagacaaacctctgccg
cccttactggcacgcgttgggggcagtattgaggttctgggtttcaacgctcgccagagg
aaagccttcctcaatgccatcatgcgctggggcatgcctccccaggacgctttcaactct
cattggctggtcagggacctgagagggaagagtgagcgtgagttcagggcctatgtgtct
ctgttcatgagacatctatgtgaaccgggagcagacggagcagagaccttcgctgatgga
gtcccacgtgagggactgtctcgtcagcatgttctcaccagaatcggggtcatgtccctt
gtcaggaaaaaggtgcaagagtttgagcatgtaaatgggaagctgagttctccagatctg
attcccatcggaatggagctgaagaaactgactgagagtgtatcctctgatcccaacacc
cctgtgccagccagccctgtcgccacgcagcccggcacccctgtcccaccagagaagact
gagtctctcttgggtaccgctgaggacaaggagaccgcagaccaagatagcaagaaactg
tcagagcacgaaaattccagtgcagagccagcatctgcacctgagaaggcagctgacagt
gaggagagcaaggccagctcagaggagaaaacaggagatgagagggacagaactgagtca
ccctccacaaagacagagtcatctgccaacacaaaagagtccgctttgaaacagacagag
ctgtcatccagtcaaacctcacctaaaatggagccctgcagagaaacagagaagtcctca
gacaaaggagatactgattctcctctggcaaaaactgaagacaaggaaaataagccagct
gttgcagatgacatgaagagtgaatacgcattagagggtcgattaaatggagacaaagac
actttggatgagatggacgagagcaggagggaggacaaaaatggattcaaagccaagttc
atgtttaatattgctgatggaggtttcacagagctgcacaccctgtggcaaactgaggag
cgagcggcgctgtcttctggaaagatgcatgacatctggcaccgtcgccatgactactgg
ctgttggctggcatcgtaacgtatcctttcccagctttgttggagcaggctctggtgatt
gaggagcagctgaggcgggcagcttacctgaatatgacccaggaccccagtcacccggcc
atggctctcaacacgcgttttgctgaggttgaatgtctggcagagtcccaccagcacctg
tccaaagagtctctggctgggaacaagcctgccaacgccgtgctgcacaaagtgctgaac
cagctggaggaacttctgagtgacatgaaagcagatgtgacacgactgcccaacatgttg
tccaggatcccaccggtatcggcccgcctgcagatgtctgagaggagcatcctgagccgc
ctcaccagcagaggcagcgaaccgccaccgcagcagccttttagccagggcgggtttggc
tgctcccagatgtacagcagcagctttggtggaggattcagaggaccggggggacagccc
atggtcaactacagtcagatgcctctgggaccgtacgtcagcgtgtcctctaacggtccc
ccaccccccacaagccatctggacaagaagtcacttgactccttgagagacgtggctacg
cctgacctcaagtcaggcaaacctagtgatgtcatctgcattgaggactag
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integrated database retrieval system
