Seriola dumerili (greater amberjack): 111234025
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Entry
111234025 CDS
T05606
Name
(RefSeq) collagen alpha-1(VIII) chain-like isoform X1
KO
K23455
collagen type VIII alpha
Organism
sdu
Seriola dumerili (greater amberjack)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C1q
BclA_C
Motif
Other DBs
NCBI-GeneID:
111234025
NCBI-ProteinID:
XP_022617642
LinkDB
All DBs
Position
Unknown
AA seq
738 aa
AA seq
DB search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NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgtacccctccagtctttctctctactcgtcacagcgttccagctgtgttta
ttacgcccgacccacggcggggcgtattacggacacaagcagccgcctcaacagcaccag
cccctgccacaatacaatgacgggtatcctcagcaacagtttttgggtaacgagatgcca
cttatgccattagtgcctcagtatggaaaagagcttccacagctgcctttgcaaatgggc
aaagagaggccactgactgagggcaagggtcaaacgtttcccagaggggctaaaggcccg
cctccccccggcccgggcggagaggggctcagagagggaccgcaaggaatccaaggcccc
cccggaataacgggaccgccgggaccgcaaggccccccgggactcccgggccagggaacg
ccagggtcaccgggaaagccgggacctcccggtcctcaaggttacccggggataggaaaa
ccgggcatgccgggattgccgggaaaacccggaggacccggattaccgggagcgaaaggc
gacctgggtcctaacggcggcgaaggaccgaccggactccccgggccggcgggtctcccg
ggtccccccggactccccgggatttcgaaatcgggaggccaggggctgccggggcagccg
ggtcctctgggggagcccggtcaaaaaggtccgcccgggatacccggcctcccgggcccc
aggggagacaaaggactcggtctacccggtctgccgggtttgaaagggcccggcgggccg
ccgggtccgcccgggaacgcgggcatgcccggcgtcggtacgcccggcctcaacggtctc
cccgggcaaccggggataccgggaaagtccggtcctcccggagagccgggaccggcgggc
tcacccggcgacagaggtcatccgggaccgccgggaccgccgggaacgggaaaaccgggg
aaagacggttttagagggcaacccgggctctcgggagggaaaggggaaccgggccccccc
ggtttaccgggaggtccgggattgccgggctacggtaaaccgggcttcccgggacctaag
ggtcacaagggacacgccggtcttcccggtcctccgggctctaaaggcgacaaaggtcac
ggaggtctcccgggcgtcatgggtcccaccggtcccggcggtacgcccggcccgccgggt
ccgataggacctcccggcagtctgggcttcccggggcaaaagggagagtacggcgccgga
ggaccgaaaggaaatccgggaataaagggcgaaccggggcccccgggccttccgggactg
ccgggtaggtcgggagagggcgggcaacccggacagagaggtttacaagggcccgtcgga
ccgaaaggagaagccggcgtcaggggtatatccggtccccccggcgcggcgggattaccc
ggaccgagaggagaggggggacaacccggagagacgggccaccaggggccgcaagggatc
ccggggctcacgggacccgggggaccgatcggacctcccgggctaccgggacaaaaaggc
gagacgggcccgcccggtaaacccggctatcccggcgacggaaagcggggaccccccggt
cacgtcggccctcaaggtaaccccggccccggcggcccgcccggacttccggggcaagcg
ggaaaacccggacctcccggacctccgggactacccgccgtatcccccgacctcggacag
atcctccccgtgaccggcccgtacggcggccaaaagctaggctacagaaagaacggaggc
gagattagcggaaacggtccggagatgcccgcgttcacggctaagctgacgaatccgttc
cctcccgtgggctctcctgtagtctttgacaaactcctgcacaacggcaatcaagattac
aatccccaaacgggcgttttcacctgtagcgtaccgggggtctactacttttcctaccac
gtccactgcaaaggaggtaacgtgtgggtggcactgatgaagaacaacgagccggtgatg
tacacttacgacgagtacaaaaagggcttgctggatcaggcttcggggagcgccgtactc
ccgttacggcaaggagacaccgcgcacatacagctgccgtcggaccaggccgcgggactt
tacgccggtcaatacgtccactcggtgtttgccggatacttgttgtacccgatgtga
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