Seriola dumerili (greater amberjack): 111234338
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Entry
111234338 CDS
T05606
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111234338 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sdu03041
]
111234338 (ddx46)
Enzymes [BR:
sdu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111234338 (ddx46)
Spliceosome [BR:
sdu03041
]
Complex A
U2 snRNP components
U2 related factors
111234338 (ddx46)
Complex B
111234338 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
111234338
NCBI-ProteinID:
XP_022618082
LinkDB
All DBs
Position
Unknown
AA seq
1063 aa
AA seq
DB search
MGRESRHYRKRSASRGRSGSRSKSRSPDKRSKKDDRDRDRSRRERSRSRDRRRSRSRDRK
RARRSRSRDRRRSRSRDRRRSGSRSRARRSRSASPSKSRRIDEKSRSKEKDNVDPVSDKK
KVKEEKEDEKVEDQDFDQNKLEEEMRKRKERVEKWREEQRKKAIENIGEIKKELEEMKQG
KKWSLEDDDDDDEEGSALMEADDDEDGEGKGERKDKEIKEEKKEEGEKEKETPMEQQAEE
DDVDPLDAYMEEVKQEVKKFNMGAMKGNDKKGAMTVTKVVTVVKTKKGPHTHKKKGELME
NDQDAMEYSSEEEEVDLQTALTGFQTKQRKILEPVDHGKIQYESYRKNFYVEVPELAKMT
TEEVNAYRLDLEGIIVKGKGCPKPIKTWVQCGVSMKILNALKKHSYEKPTPIQAQAIPAI
MSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRPLEESEGPISVIMTPTRELALQITKECK
KFSKPLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANSGRVTNLRRVTYV
VLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILAKPIEVQVGGR
SVVCSDVEQHVLVIDEDKKFLKLLEILGHYQEKGSVIIFVDKQEHADGLLKDLMKASYPC
MSLHGGIDQYDRDSIINDFKNGACRLMVATSVAARGLDVKQLILVVNYSCPNHYEDYVHR
AGRTGRAGNKGYAYTFITEDQVRYAGDIIKALELSGSPVPPELEQLWASFKDQQKAEGKT
IKSSSGFSGKGFKFDETEHALANERKKLQKAALGLQDSDDEDGALDIEEQIESMFNSKKR
VKDLSAPGAATGPAGAVATTAAASGGLPGLGPTSAGNIQKLEMAKRLALKINAQKNLGAE
AQDVMQQATNAILRGGTIMTPSVSAKTIAEQLAEKINAKLNYTPVEKLEEERQAAEQAET
VKRYEEELEINDFPQTARWKVTSKEALQRIGEYSEAAITIRGTYFPPGKEPKEGERKIYL
AIESANELAVQKAKTEITRLIKEELIRLQNSYQPTSKGRYKVL
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atgggccgtgagtcgagacactacaggaagcgctcggcgtctcggggacggtcaggtagc
cgatcaaagagtcgctccccggacaaacgctccaagaaagacgatagagaccgagaccga
agcaggagggaaaggtcacggagccgggaccgccgaaggtctcggtccagagacagaaaa
cgggccaggcgatccaggagcagagacaggaggagatccagaagccgagacagaaggagg
tcaggcagcaggagcagagcccggaggtctcgatctgccagccccagcaagagcagaaga
atagatgaaaagtcaaggagcaaagagaaagacaatgtcgatcctgtatctgataagaaa
aaggttaaagaggagaaagaggatgagaaggttgaggatcaagactttgaccagaacaag
ctggaggaggagatgagaaagaggaaggagcgggtggagaagtggagggaagagcagagg
aagaaggccatcgaaaacatcggcgagatcaagaaagagctggaggagatgaagcagggc
aagaaatggagcctggaggatgatgatgacgatgacgaggaaggttcagcgctgatggag
gcagacgatgatgaagatggagaggggaagggggagaggaaagacaaagagattaaggag
gagaagaaagaggagggtgagaaggagaaggagactcccatggagcagcaggctgaggag
gacgatgtggatcctctggacgcctacatggaggaggtgaaacaggaggtgaagaagttc
aacatgggagcaatgaaaggaaacgataagaaaggagcaatgacggtaaccaaagtggtg
acagttgttaaaaccaagaaaggacctcacactcacaagaagaagggtgagctgatggag
aatgaccaggatgccatggagtactcgtcagaggaggaggaggtggatctgcagacggct
ctgacaggcttccaaaccaaacagaggaaaatcctggagcctgttgaccacgggaagatc
cagtatgagtcgtaccgcaaaaacttctatgtggaagtgcctgagctggccaagatgact
acagaagaagtgaacgcatacaggttggacctggaaggcatcattgttaaaggaaagggc
tgccccaagcccatcaagacctgggtgcagtgtggggtgtcgatgaagatcctcaacgct
ttgaagaagcacagctacgagaagcccacccccatccaggcccaggcaatccctgcgatc
atgtcaggccgagacctgattggcatcgctaagaccggcagtgggaaaaccatagccttc
ctgttgcccatgttccgacacatcatggaccagaggcccttggaggagtctgagggaccc
atctctgtaatcatgactccaaccagagagttggctctgcagatcaccaaggagtgtaag
aagttctctaaaccgctgggcctcagagtggtgtgtgtttatggaggcacgggtatcagc
gaacagattgctgagctgaagagaggagctgagatcattgtgtgcacaccaggaagaatg
attgacatgttgggggccaacagcggtcgagtcaccaacctgcgcagagttacatatgtg
gtgttggatgaagcagacaggatgttcgacatgggcttcgagccgcaggtgatgcgtatc
gtggacaacgtgcgtccagaccgtcagacagtcatgttttcagccaccttccccagagcc
atggaggcgctggctcgtaggatcctagctaagcctattgaggtccaggtgggaggccgc
agtgtcgtctgctctgatgtggaacaacacgtgctggtgattgatgaggacaagaagttc
ctgaagctgctggagattctgggtcactaccaggagaagggttcggtcatcatctttgtg
gacaaacaggagcatgcagacggactgttaaaagacctgatgaaagcctcgtacccgtgc
atgtctctgcatggaggaattgaccagtacgacagagacagcatcatcaatgacttcaag
aatggagcttgtcgtctgatggtggccacctctgtggcagccagaggcctggatgtcaag
cagctgatcctggtggtcaactacagctgtcccaaccactacgaggactacgtccacagg
gccggacgcacaggccgagcaggcaacaagggatacgcctacaccttcatcacagaggat
caggttcgctatgctggtgacatcatcaaagccttagagctctcaggttctcctgtccca
ccagagctggagcagctttgggcctccttcaaagaccaacagaaagcggagggtaagacc
attaagagcagcagtggcttttcaggaaaaggcttcaagttcgacgagacagaacacgcc
ctggccaatgagagaaagaagctgcagaaagctgctctcggattgcaggactctgatgac
gaggatggagccctagatatcgaggagcaaatcgagagcatgttcaactccaagaagagg
gtgaaggatctgtctgctcccggtgcagccaccggtcctgcaggggcggttgccaccacg
gcagctgcctccggagggctgccaggcctcggacccacatctgctggaaacatccagaaa
ctggagatggccaagaggctggcgctcaagatcaacgctcagaagaacctgggcgctgag
gctcaggacgtgatgcagcaggccacaaacgccatcctgcggggcggcaccatcatgact
ccctctgtgtcagccaagaccatcgctgagcagctggcggagaagatcaatgccaagctg
aactacacccctgtggagaagctggaggaggagcggcaggcagctgaacaggcagagacc
gtcaagagatatgaagaggaactggagatcaatgacttccctcagacggccaggtggaag
gtgacatctaaagaagctctgcagaggatcggtgaatactctgaagctgctatcaccatc
agaggaacctatttccctccaggcaaagagcctaaggagggagaacgcaagatctacctg
gctattgagagtgctaacgaactggctgtgcagaaagccaaaacagagattacacgatta
atcaaggaagagctcatcagattgcaaaattcctaccagccaacgagcaaaggccggtac
aaagtgttgtag
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integrated database retrieval system
