Seriola dumerili (greater amberjack): 111234741
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Entry
111234741 CDS
T05606
Symbol
col20a1
Name
(RefSeq) collagen alpha-1(XX) chain
KO
K24357
collagen type XX alpha
Organism
sdu
Seriola dumerili (greater amberjack)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
VWA_2
FN3_Tor_3rd
DUF4959
Motif
Other DBs
NCBI-GeneID:
111234741
NCBI-ProteinID:
XP_022618644
LinkDB
All DBs
Position
Unknown
AA seq
1578 aa
AA seq
DB search
MLFFLLSVLLLSPGVHGQGRLKLTVLSEDRLQMKWKEADGPVQGYKVRVRPISEVPQPEL
MLTTTRGRATVAGLDSSQEYALQVLVLNGTTEKLLAKRRFTMEGLREEEMIRSGSREQRK
KLLPGGSGSGDLDDATEALLGLPTILYPDPITTTTTTTTTTTAAATTEPPATETPSQLPD
EAPEKTAKEKRKRKKEKERDRSKVENKEEQGTTQGKRAEDKPRKAPFPTQPVTGVSPRKP
FECNSDAAADIMLLVDGSWSIGRTNFRRVRDFLEGLVMPFHIGPNHIQIGLTQYSGDPRT
EWHLSNFTTKDQLLEAVRNFRYKGGNTFTGQALLHVMEENMRAEAGARSDTPFFLVLLTD
GKSQDDAIAAANRLKNAGVEIIAVGVKNADEAELRQVASEPVDLNVYNVNDFPLLTKLVA
RLVHILCGRIEDRGIKKRMEPAPTADPALSYPSPTDLRFSELGSREVKLHWTNPAKPVQQ
YRVVYHSAEGQRPQEVVLAGSESTVLLEGLSSQTLYHVSIFPVYEDNVGLALRGTVTTLA
LAMPANLEVTPVSFSALRVSWGAAPGATQYMILYSALSHGEPDDAKEEKFSADQTVVELA
GLLPETDYSVTLYALYDEDPSDPVTAVAATFPLPPPLSVQFPMVTHSGLRVTWVPGAVDV
PGHRITYSTNHGSDVKQMEVTGLISVLVQNLSSLSRYRVSVQSHYPQGLSAALTSNVTTL
KVPSPSDLRVSNFSGSDITVRWEAAADDVVSYLIKWISLSGGDLRQLRVSGESEGAILEG
VEDDKEYQISLSALYGDGAQSEAVAIRYSTLSGGGPASVLVSEETAVSFVVSWVPPNAHV
LQYRVSYTALTGAETQDDTVLVPGVEKRVVLESLQPDTRYSILVTAEYRNREGGSGSAQG
KTTSLRVMSVSVVRSDHSSICVSWRPVSAVDGYRIVIQSVKDKDTKEEAVDESSSSHCFT
DLEPETLYRISVHSLLGSAEGAAVSILHPTATAPARIPIHPRMYPIHNEVCPEVTIRNSI
VKGFDMMEAFGLTQSAHSSVEGVAAEPFVFNTVPTFTLYRDVQLTQSTKFIHPAGFSPEH
TVSIAFRVLQDTPREPFALWQLTDDDFQPKMGVVLDPTTKHLVYFSLDYRGEVQELTFDQ
PQVHRLFYGSFHKIHLSVSQVSVSLSVDCQRVGERPARPLGNLPTDGFEMLGKLVKTRGP
SSGSAPFQLQSFEIVCNTTWASEDTCCDLPGVRDEESCPAPAYTCSCSSDIPGAPGSPGP
IGKPGPRGGKGDKGEQGQKGEVGPPGKSGFEGGLGLLGSAGPRGMTVQGKAGPPGAAGSK
GDPGRPGLQGLPGPPGPKGEVGIAGPQGIRGVEGNIGAPGITGPRGFQGMPGHPGPLGER
GHSGPVGPTGLPGNKGERGEKGEPQSMAMIYQLVTQACEQLVHEEVLKLDMFINEVSRKP
APIEEPVGPPGEPGIPGPKGPPGGRGAMGHVGPRGRPGRAGYPGEQGQRGMPGNKGDAGT
KVQGPTGVKGFAGPPGETKLGAPGPKGDDGKSGPVGIPGPPGQPGEIGPPGVCDSSGGCQ
RVPQQTGYPEDPYYGYQP
NT seq
4737 nt
NT seq
+upstream
nt +downstream
nt
atgctgtttttcctgctcagtgtcctgctactgtccccgggggtccatggccaaggtcgt
ctgaagctcacggtcctatctgaggacagactgcagatgaaatggaaggaggccgatgga
cccgttcagggctacaaggtccgagtgaggcccatctcagaggttccgcagccggagctg
atgctgaccaccacgcggggccgggccaccgtggcaggactggactccagtcaggaatac
gccctccaagtcctcgtgctcaacgggacgacggagaaacttctcgccaagagacgattc
acgatggagggtctgcgggaagaagaaatgatccgcagcggtagccgagagcagaggaag
aagttgttgccaggtgggtcggggtcaggagacctggatgatgcaacagaggctctgctg
ggcctgccgactattctgtatccagaccccatcaccaccaccaccaccaccaccaccacc
accaccgctgctgctactacagagcccccagccactgaaaccccctctcagctccccgac
gaggccccagagaaaactgccaaagagaagaggaagaggaagaaagaaaaagagcgggat
cggtctaaggtggagaacaaggaggagcagggaacaacacagggtaaacgggccgaggac
aaaccccggaaggctcccttccccacccagccggtcacaggcgtgtctccaaggaaacca
tttgagtgcaacagtgatgcagcggcggacatcatgctgttggtggacggctcctggagc
attggacgcactaacttcagacgtgtcagagacttcctggagggcctggtgatgcccttc
cacatcgggcccaaccacattcagatcggtctgacccagtacagtggggaccctcgtacc
gagtggcacctcagcaacttcaccacgaaagaccagctgctggaggcagtgaggaatttt
agatataagggaggaaacacatttacaggccaggcgctgctccacgtcatggaggagaac
atgagggccgaggcaggcgcgaggtcggacacgccgtttttcctggtcttgttgaccgat
gggaaatctcaggatgatgccattgctgcggcaaaccgtctgaagaatgccggcgtggag
atcatcgctgtaggtgtgaagaacgctgatgaagccgagttgagacaagtggcgtcggag
ccggtggatctgaacgtctacaatgtcaatgacttccctctgctcactaagctggtggca
cggctcgtgcacatcctgtgtgggaggatagaagaccgtggcattaaaaaacgaatggag
cctgcgcccacagcagaccctgccctctcctaccccagtcctactgatctgcgcttctct
gaactgggctccagagaagtgaagctccactggaccaatcctgctaagccagtccaacag
tacagagtggtttaccacagcgccgagggtcagagaccgcaggaggtggtgctggccggc
tcggagtccaccgtgctgctggaaggcctctcctctcagacactgtaccacgtctccatc
ttccctgtgtatgaggacaatgttggcctggctctcagaggaactgtcaccacattggcc
ctcgccatgcccgccaacctggaggtgacgcctgtctccttcagcgcgctgcgagtgagc
tggggtgcagcacccggagcgacgcagtacatgatcctgtactcagctctgagccacgga
gagcctgacgacgccaaggaggagaaattcagcgcagaccagacggtggtggagctggcg
gggttactgccggaaacagactactctgtcacgctgtacgctctctacgatgaggatccc
agtgaccctgtcactgccgtcgctgccacgttccctctcccgccgcctctgagcgttcag
ttcccgatggtcacccacagtgggctgagggtgacctgggttcccggagccgtggacgtc
cccggccacagaatcacctacagcaccaaccacggcagcgacgtcaagcagatggaggta
acagggctgatctcggtgctggtgcagaacctgtcctctttgtccagataccgggtttca
gtccagtctcactacccacaaggcctttctgcggcgctcaccagtaacgtcaccacactg
aaggtgccctcgccgtcagacctcagggtgtctaatttctcaggcagtgacatcactgtg
cgctgggaggctgcagctgatgatgttgtgtcctacctcatcaagtggatctccctcagc
ggaggagacctgagacagttgagggtgagcggtgagagtgaaggggcgatcctggagggg
gtggaggacgataaggaataccagatctctctgtctgcactttatggagatggagctcag
agcgaagctgtggccatacgctatagcaccttgtctggcggaggcccggccagtgtgttg
gtctccgaggagactgcggtcagctttgtggtcagctgggtgcctcccaacgctcacgtc
ctccagtaccgcgtgtcttacactgcactgaccggagctgaaacccaggacgacactgtg
ttggtcccaggtgttgaaaagcgggtggtgcttgagtctttacagccagacacacgttac
agcatcctggtcaccgctgagtaccgcaacagagaaggaggcagcggttcggctcagggc
aaaaccaccagtctgcgggtgatgagtgtgagtgtggtcaggtcagaccactccagcatc
tgtgtgtcttggagacccgtgtctgccgtggatgggtatcgtattgtcatccagtccgtt
aaagacaaggacacaaaggaggaagcagtcgatgagtccagcagcagtcactgcttcact
gacctggaaccagagactctgtatcgcataagcgtgcactcgctcctcggctcagcagaa
ggcgctgctgtgtccatcctccatccaacagccacagctccagccaggattcccatccat
ccccgcatgtatccgatccacaacgaagtgtgccctgaagtcaccatcagaaacagcatc
gttaaagggtttgacatgatggaagcgttcggtctgactcagagcgcgcactcgtccgtt
gaaggcgtggcagccgagcctttcgtcttcaacaccgtccccaccttcaccctgtacaga
gacgtccagctgacacagagcaccaagtttatccaccctgcaggcttctctccagagcac
accgtcagcatcgccttccgcgtgttgcaggatacacccagggagcccttcgccctctgg
cagctcaccgacgatgacttccagcccaagatgggagtggtgctcgaccctaccacgaag
cacctggtgtacttcagtctggactacaggggagaggtgcaggaactgaccttcgaccag
ccgcaggtccacaggctcttctatggcagttttcacaagattcacctgtcagtcagccag
gtgagtgtgtccctgtctgtggactgccagcgtgtgggtgagagaccagcccgccctctg
ggaaacctacccactgacggcttcgagatgctgggaaaactggtgaagacccgaggaccc
agtagcggatctgccccgttccagctgcagtcctttgagatcgtctgtaacaccacgtgg
gcctcagaggacacctgctgtgacctgcctggagtgagagatgaggagagctgtcctgcc
ccggcgtacacctgtagctgttcctctgacatccctggagctcctggttcccccggacca
attggaaaaccaggtcctcgtggtgggaaaggcgataagggagagcaaggccaaaagggg
gaagtgggtcctccaggaaaatctggatttgagggaggccttggactcctcggcagcgca
gggccccgaggaatgactgtccagggcaaagcgggtccaccgggtgcagcggggtcaaaa
ggggatcctggtcgacctggactccagggtttaccaggacctccaggtccaaaaggggaa
gtggggatcgcagggccccagggcatcagaggggtcgagggaaacattggtgcacctggt
atcactggacccaggggtttccaaggaatgccgggacacccagggcctttaggggaaagg
ggccactcaggacctgtgggacctacgggtctgccaggtaataaaggggaacgaggagag
aagggggaacctcagtctatggccatgatctaccaactggtcacacaagcctgtgagcag
ctagtgcacgaggaagtgttgaagcttgacatgtttattaacgaggtcagtcgtaagcca
gctcctattgaggagccagtggggcccccaggggaacctggtataccaggacccaagggc
ccaccaggtggcaggggtgccatgggacatgttggcccaagggggagacctggcagggct
ggatatccaggagagcaggggcagagagggatgccagggaataaaggcgatgcagggacc
aaagtccaggggcccacaggggtcaaaggatttgcaggtcctccaggtgagaccaagctg
ggagccccaggtcccaaaggagatgatggtaagtcaggacctgtagggatccctggacct
cctggacagccaggcgagatcggacccccgggtgtgtgcgacagtagtggaggctgccag
agagttccccagcaaacaggttacccagaagacccttattatggctaccagccctga
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integrated database retrieval system
