Seriola dumerili (greater amberjack): 111235166
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Entry
111235166 CDS
T05606
Name
(RefSeq) collagen alpha-1(XVII) chain-like
KO
K07603
collagen type XVII alpha
Organism
sdu
Seriola dumerili (greater amberjack)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
111235166
NCBI-ProteinID:
XP_022619223
LinkDB
All DBs
Position
Unknown
AA seq
2049 aa
AA seq
DB search
MDELTGQMDFSGGLSGERVVTETVTTTTRLTSLPPKGTSGSNHRNMSSGAGGLGLEKNVL
TQNSSGTYFSSSSVGVNTSNYSSSSGVYLGGDSSGGGDGGGSFIDGEGYRSGGGGGGGGG
LGGGSYFVSSVSKVRSSSSGGARRAQTAGSSGGLSPAFRERKNISSRSGGYDGSSSANSS
PEFTRKDYGNYCSSTTRGRSESRESEIRARLQSASPTACRWTELDDVKKLLKGRSSSVSP
TRSSTASITLPVPKKASVEAKTVSVATQSVSTSFGSGVKSGGFHTIDASGLYDTSLESGR
IDTGVKSGQYDVTLISRQYDTGMKSGQYETNLKSGQFDTGVKSGQYDVTLKSGQYDTGLK
SGQYDIGLKTGQYDTGVKSGQYDVTLKSGQYDTSVRSGQYDTSVRSGQYDTMRSGQYDTM
RSGQYDTMRSGQYDTLDATLPTFAWSTSTLPSSSTTAVTGNTSSYTYQVSNNMSGGTSLV
APTSPSALSVYGFQNNLAPTSGSVLTTSGANINANLGGYGVQKNVSNSGGVVSTGVSTTT
RSQTDETYKKDYKFLISDKENVQAKRDTETLILAKDSGKQFTTTSSGVLGGGSLSGDSIK
KEKLISSYSETAPLKTESGNTYYGSSGVVMKDKATYAEIHRDSGIFRGGGFCCCSDSCCS
WWKWLLGLLLLSLLLLGLLFGLIALAEDVRKLKNRVATLEAQSAATAHTSRFSGSSNDIN
SHVGVGGGGSGIGAGGFTGSSSGNDIGTAGSFGGASGASGASGAKQHLLSIQKMYRPHRA
LDNKRAWLAWRLGWACGTSGGDLDSDSESGEEDPQGLRVPLHLEHLRSKVTHCRRCYRNQ
YQLCRRWYRNHYQHCQRFHYDWKLWWCQWGQWCQWGQWASGASGASGASGASGASGASGA
SGASGASGASGASGASGASGASGASGGVTDTSFGGSAGSAGTGYGSSGGSAGTGYGSSGG
SAGTSHSGSSSSAGTSHSGSAGSVGSGYGTSGGRAGTGYGSSGGSAGTSHSGSSSSAGTT
YGGSAGGSGTGFSGGTGFGTGMSGGHIDAAVLQMTIQHMLRSEMQSQTFRAFLTSSVQGE
RGLPGPKGEPGSKGDAGFPGIPGAPGAMGHAGPEGPKGQKGSQGEHGMEGPPGIRGREGP
AGPRGEPGTASFGLKGDRGAPGEPGVPGSVGPAGQMGQKGSAGAPGLSGPPGQPGPQGFR
GESGSPGSKGDRGLAGFQGLKGEAGDKGLRGLQGDTGLPGLPGQAGEKGSKGSMGLSGHD
GAKGSRGDQGSAGPPGLRGPAGPPGDAGLPGAPGLQGPPGIPGNPGQPGAKGDTGEPGRI
INAAGSTSIGIPGPPGPSGPPGPAGPPGLSGPIGPAGLPGQPGPKGDRGYKGEQGEAGIS
VRTTETISSTGARTQFSSGGASALPGPPGPPGPPGHPGRPGDSRQGPPGPPGPPGQPGYG
RPGPKGDRGESGFTSSSGTFYTGPPGPPGPAGPKGSTGSPGPRGYQGEQGQPGRPGSSGG
VSTYAGGHGIPGPPGPPGPPGRPGPQGIKGDTGAPGISGSSRGSISVTSGPPGPAGPPGP
PGQPGSFASSSEMRLYISEYLNRIRQSGNPGPPGPPGPPGIPGTYSGSIEDIAARIIAYL
RSSGSGLIIGPPGPPGPPGPTIELQSVSDVIAVLRRDDVRRYLISIAQQQQLPSGGSNGL
VGSYSIEQIATYVFNIMNDRGIARGPPGPPGPPGPAGAGGSGFSTATIDYSALMRNTDFR
SWISSAIQHGPPGPRGEPGLPGPAGPQGPPGVSTATVYGAGGRGYSLEDIQRYLQSSGFR
GHPGPPGPPGPQGPPGTFTRSVSISGNFPRESIRAEIQDYLTSDSVRQFITGPPGPQGPR
GQKGERGELVYVQGNTQSQGYAHGDSRYGSERREIDISKLAETLDYSNVALKVTDYIRNQ
GLLQGYLVEGPSRTNVRAIQGPPGPPGPPGPPGYSRVIGSYGNVTADLMEFFRTHGTIPG
PPGNPGPKGDRGYPGPRGEKGDLGQQGLPGLPGAYTVQIPHRVQKRDTGKKSGWSSSAAS
PSGQWWLKG
NT seq
6150 nt
NT seq
+upstream
nt +downstream
nt
atggacgagttaacaggacagatggacttctctggaggcttgtcaggagaaagggttgtg
acagaaaccgtaaccacgacgaccagactgacttctctaccaccaaagggaaccagcgga
tcaaatcacaggaatatgtccagcggtgctggagggctgggcttggagaagaatgtctta
acccagaacagcagtggaacttatttctcttcatcctctgtaggtgtgaacaccagcaac
tacagctcctcctcaggagtttacctaggaggagactcctcagggggaggcgatggaggg
gggagcttcatagacggtgaggggtacagaagtggaggaggaggaggaggaggaggagga
ttgggcggaggcagttatttcgtgagctcggtgtcaaaggtcaggtccagctcgtcgggt
ggtgccaggagagcgcagactgctggctcatcaggaggcctgtcgccagctttccgggag
aggaagaacatatccagccgctcagggggttatgacggaagttctagtgctaattcctct
ccagaatttacacgaaaagattatggaaactactgctccagcaccacaagggggaggagc
gagagcagagagagcgagatcagagccagactacaaagtgcctctcccactgcttgcaga
tggacggagctggacgacgtgaagaagctgctgaagggacgttccagcagcgtcagcccc
actcgctcctccaccgcctccatcaccctgcctgtccctaaaaaggccagcgtggaagcc
aagaccgtctctgtggccacacagtcggtttcaacttcatttggctctggtgtgaaatca
ggtggattccacaccattgatgcgtcaggcctgtatgataccagtctggaatctgggcgt
attgatactggcgtaaaatcaggccaatatgatgtcactctgatatcaagacagtatgac
actggtatgaaatcaggccagtatgagaccaatctgaaatcaggacagtttgatactggt
gtaaaatctggccagtatgatgtcactctgaaatcaggacagtatgataccggtctgaag
tcaggacagtatgatatcggtctgaaaacagggcaatacgatactggtgtaaaatcaggc
cagtatgatgtcactctgaaatcaggacagtatgataccagtgtgagatcaggccagtat
gataccagtgtgagatcaggccagtacgacaccatgagatcaggccagtacgacaccatg
agatctggccagtacgacaccatgagatctggccagtatgacacactggacgcaacactt
ccaactttcgcttggtccacctccacgctgccctcctcctccaccacggcggtcactggc
aacaccagcagctacacgtaccaggtcagcaacaacatgtcaggaggaacctctctggtc
gcccccacctcaccctcggctctgtcagtttatggttttcagaataacctggcgcccacc
tctggcagtgtgctcaccaccagtggagccaacataaatgctaacttaggaggttatggt
gttcagaagaacgtgtccaatagcggtggtgtcgtcagcactggagtctctacaaccact
agatcccaaactgatgaaacatataagaaagactataagttcttgatctctgacaaggag
aatgtccaagccaagagggacacggagacgctcatcttggctaaagacagcgggaagcag
ttcaccaccaccagcagcggtgttttaggaggagggtcactatctggagattcaataaag
aaagagaagcttatttcaagctacagtgagacggccccactgaagacagagtcgggcaac
acttactatggatcatcgggagttgtaatgaaagacaaagccacctatgcagagattcac
agggacagtggcatcttcagaggtggaggattttgctgctgctctgactcttgttgctcc
tggtggaaatggctgctgggccttctcctcctctcccttctcctgctgggactcctgttt
ggcctcatcgcactggctgaggatgtgagaaagctgaagaatcgagtggccaccctggag
gctcagtcggccgccacagctcataccagtcggttctcaggttcttccaatgacatcaac
agccatgtgggagttggaggcggaggctcaggcattggtgctggcggcttcacgggcagc
agcagtggcaatgatatcggcactgcaggaagctttggtggtgccagtggggccagtggt
gccagtggggccaaacaacacttacttagtattcagaagatgtataggccgcatcgtgca
ctagataacaaaagagcctggctggcctggaggctaggatgggcctgcgggaccagtgga
ggggacctggatagtgacagtgagagtggggaggaagaccctcagggcctgcgtgtccca
ttgcacctggagcacctgaggtcaaaggtcacacactgccgccgctgctaccgtaaccag
taccagctctgccgccgctggtaccgtaaccactaccaacactgccagcgcttccactat
gactggaagctttggtggtgccagtggggccagtggtgccagtggggccagtgggccagt
ggggccagtggtgccagtggtgccagtggggccagtggggcaagtggggccagtggggca
agtggggcaagtggggcaagtggggcaagtggggccagtggggccagtggggccagtggg
gcaagtggggccagtggcggagtcaccgacaccagcttcggtggcagcgctggcagtgct
ggtactggttatggtagcagcggcggcagtgctggtactggttacggtagcagcggtggc
agtgctggtaccagtcatagtggaagctctagcagtgctggtaccagtcatagtggaagc
gctggcagtgttggtagtggttacggtaccagcggcggcagagctggtactggttacggt
agcagcggcggcagtgctggtaccagtcatagtggaagctctagcagtgctggtaccact
tatggtggaagcgccggcggttctggtaccggtttcagcggtggcactggctttgggact
ggcatgagtggaggacacatagacgctgctgttcttcagatgacaatccaacacatgctc
agatctgaaatgcagtcacagactttcagagcttttctaacatcctcagtgcagggagag
agagggctgcctggaccaaaaggtgaacccggatctaaaggtgatgctggtttccctgga
attccaggtgctccaggtgcaatgggacacgcaggccctgagggtcctaaaggacagaaa
ggaagccaaggtgaacatgggatggaggggccaccaggtatcaggggtcgtgagggccca
gctggccccagaggtgagccaggaactgcaagctttggactgaaaggtgacagaggtgct
cctggagagcctggggttcctgggtctgtgggacctgccggccagatgggacaaaaaggc
tcagcaggagctcctggtctttctgggccaccaggtcaaccaggtcctcagggtttccgt
ggcgagtcagggtcacctgggtctaaaggtgacagaggacttgctggatttcagggactt
aaaggtgaagctggagacaaaggtctcagaggtctgcaaggtgatactggtttaccaggt
ctgcctgggcaagctggagagaaaggatccaaagggtcaatgggattgtctggacatgat
ggtgcaaaaggatcaagaggtgaccaaggatctgctgggccacctggactcaggggacct
gctgggcctcccggtgatgctggacttccaggagcacctgggcttcaaggaccaccaggg
ataccagggaatccaggacaacctggcgccaaaggtgacactggtgaacccggaagaatt
atcaatgcagctggttccacatctattggcatcccaggaccacctgggccctctggtcct
cccggccctgctggacctcctggattgtcaggtcccattggccctgctggtctgcctggc
cagcctggtcctaaaggtgacagaggatataagggagaacagggagaagcaggaatatca
gtgagaacgactgaaactataagttcaactggagcaaggactcagtttagttctggtgga
gcctcagcactacctggcccacctggcccaccgggtccacctggtcatcctggacgtcca
ggagattcaagacaaggacctccaggaccacctgggcctccaggtcagccaggttatgga
agaccaggacctaaaggagacagaggagagtcaggctttacatccagctctggaacgttt
tacactggaccaccaggaccacctgggcctgctgggcctaaaggatcaacaggttctcct
ggaccaaggggctaccaaggtgaacaaggacagccaggaagaccaggaagctctggggga
gtgtcaacttatgctggaggacacgggatccctggtccaccaggtccaccagggccaccc
ggacgtccaggaccacaaggaatcaaaggggacaccggagctcctggtatttctggctct
tcaagaggctccatttctgtcacttcaggtcctcctggtcccgcaggccctcctggccct
ccaggccagccaggctcttttgcttcttctagtgagatgcgcctatacatctctgaatat
ctaaatagaatcagacagtctggtaaccctggacctccaggtccacctgggcctccagga
atccctggaacctactcaggctctatagaggacattgccgctcggatcattgcctacctg
cgaagttcaggctcaggcctcatcattggtcctccaggaccaccaggtcctcctggacct
actattgaacttcagtcagtcagtgatgtcattgctgtgcttcggagagatgatgtgagg
agatatttgatctcaattgcacaacaacaacaactaccatcagggggatcaaacggactt
gtaggcagttacagtatagaacagatagcgacatatgtcttcaatatcatgaatgacaga
gggattgctagaggtccacctgggccacctggtcctcctgggcctgctggtgcaggaggt
tctggcttcagtacagctacaattgactattctgcactgatgagaaatacagacttccgc
tcttggatcagctctgccatacaacatggtcctcctggtcctcgaggtgagccagggcta
cctggccctgctggccctcaggggcctccgggagtctccactgccactgtgtatggggcg
ggaggtcgtggctacagcttggaggacattcagcgttacctgcagagctctgggttcaga
ggtcatcccggccctccaggtcctccaggtccacagggtccaccaggcactttcactaga
tcagtttccatcagtggaaacttccctcgggagagcattcgtgctgaaattcaggattat
ctgaccagtgacagtgttcgtcaattcatcaccggacctccagggcctcaggggccaagg
ggtcagaaaggagaacgtggagagcttgtttacgtccaaggcaacacacagagccagggc
tacgctcatggtgactcccgctacggctcggagcgcagagagatcgatatcagcaagctc
gctgagacattggactactccaacgttgccttgaaagttacagactacatcaggaatcaa
ggcctgctgcagggctacctggttgagggtccttcgaggacgaatgtaagagcgattcaa
ggaccccctggtccacctggtcctcccggaccacctggttacagccgtgtcatcgggtcc
tatggcaatgtcacagctgacctcatggaattcttcagaacccatggcaccatccccggc
cctccaggaaaccctggaccgaagggagacagagggtacccaggacccagaggagaaaag
ggtgatcttggacaacagggtttaccaggattaccaggggcatacactgtccagattcca
cacagagtgcagaagagggatacaggtaaaaaaagtggttggtcgtcgtcagctgcatcg
ccgtcaggccaatggtggctaaagggttaa
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integrated database retrieval system
