Seriola dumerili (greater amberjack): 111235420
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Entry
111235420 CDS
T05606
Symbol
hdac6
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
sdu
Seriola dumerili (greater amberjack)
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sdu01009
]
111235420 (hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdu03019
]
111235420 (hdac6)
04131 Membrane trafficking [BR:
sdu04131
]
111235420 (hdac6)
03036 Chromosome and associated proteins [BR:
sdu03036
]
111235420 (hdac6)
Enzymes [BR:
sdu01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
111235420 (hdac6)
Protein phosphatases and associated proteins [BR:
sdu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
111235420 (hdac6)
Messenger RNA biogenesis [BR:
sdu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
111235420 (hdac6)
Membrane trafficking [BR:
sdu04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
111235420 (hdac6)
Chromosome and associated proteins [BR:
sdu03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
111235420 (hdac6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
111235420
NCBI-ProteinID:
XP_022619603
UniProt:
A0A3B4VA50
LinkDB
All DBs
Position
Unknown
AA seq
1115 aa
AA seq
DB search
MQSGGSEMQSGPDPPGSGLKSVRRSPRLSPQGSSSKGKEEKKRGNSLQEVKRKGRMERSR
EDTEEDLNSRLQMLDLSSRSAASGTGLVYSETFTHHKNLWELSHVESPDRVTSIMEELER
RDLLSHCIRVEPREATEEELLLVHMKHYVDVMRSTQTMSESELHTLSEKYDSVYLHPESF
QVCVLAVGSVLQLVDQVMTSELRNGFAVIRPPGHHAQANQANGFCVFNNVAIAARYAQTT
HSVSRVLIVDWDVHHGQGIQYQFQEDPSVLYFSVHRYEQGSFWPHLPESDSQFVGSGRGE
GRNINLPWNQTRMTDADYIAAFQQLLLPVAYEFQPQLVLVSAGFDAAVGDEKGEMCVSPQ
CFHALTHMLMSLAEGRLVLALEGGYNLQSTAEGAAACVSALLGGACPPLTPPTAPSDSAL
QSISQTVTALYPHWASLQVLEGSSLAEGRVIRATTNEESTKQNSPAPSVATTTGLVYDER
MMEHLNMWDRHHPEQPQRISKIFSRHQQLGLVDRCQRIPARLATEEELTMCHSVQHIEQM
RATAVMKPRDLHKLGEEFNSIYINNQSFKSAQLSAGSCFSAVERILRGQVSNGVAIVRPP
GHHAERDSPCGFCFFNTAALVARHAQKISHHAPLRVLILDWDVHHGNGTQHMFEDDDSVL
YISLHRYDNGTFFPSSEDAAPDRVGVARGAGFNVNVAWSGGRMGDSDYLAAFHHVVMPIA
TEFNPGLVLVSAGFDAARGDPLGGYNVTPEGYAHLTHLLMSLAGGRVLLILEGGYNLSSI
SDSMAMCTSVLLGDPPPSLVTPFPPPHHSAVASINEVIRHHAPYWRSLRIHITESVRASL
PSPKHRGKRSSKGKGRKSEQRTSDKPPLPPTGPGDTTIERNLDQLTEGLASLDISQTSAN
HTPATSTPVGGARPKVRLSPEKVTCEGEVKAESNAATPEKSQSADSTPSQTQTVAMAASE
LAAIGDEAAGGAGMEGEAEGACGWSRPEMNVELLCGGQTDGSTLYVVDPLSWCPHLDAVK
PLPPSNIDVHLPCQDCGSDAENWICLTCYQVFCGRYVNEHMVTHGAVSEHPMVLSFSDLS
VWCYLCEAYVHNQILFEAKNAAHCAKFGEEIPPWS
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atgcagagcggtggatcagagatgcagtctggaccagatcctccaggatctggactgaag
tcagtcagaagatctcctcgtctgtctcctcagggcagcagcagtaaaggaaaggaggag
aagaaacgaggaaacagtctgcaggaggtgaagagaaaagggaggatggagaggagcaga
gaggatacagaggaggatctgaacagcagactgcagatgctggacctatccagcaggtca
gcagccagtgggacaggtttggtttactcagagaccttcactcatcataagaacctgtgg
gagctcagtcatgtagagagtccagacagagtgacgtccatcatggaggagctggagaga
cgagacctgctgtctcactgcatcagagtggagcccagagaagctacagaagaagaactg
ctgcttgttcacatgaaacattatgtggatgtgatgaggtcgactcaaacgatgtcagag
agtgaactacacactctttctgagaaatacgacagtgtttaccttcatcctgagtccttc
caggtgtgtgtgttggcggtgggctcagtcctccagctggttgatcaggtgatgacctct
gaactcagaaatggattcgctgtcatcagacctccaggtcatcatgctcaggccaaccag
gccaacggtttctgtgttttcaacaacgtggcaattgcagctcgatacgctcagaccaca
cactcagtcagcagggtgttgatagtggactgggatgttcatcatggtcaggggatccag
taccagttccaggaggaccctagcgtcctgtactttagtgtccataggtatgagcagggc
tctttctggccccacctcccagagtctgacagtcaatttgtcggtagtggacgaggcgaa
ggaagaaacatcaacctgccctggaaccagacaaggatgactgacgctgattacatcgct
gcttttcaacaactgctgctgcctgtagcctatgagtttcagcctcagctggttctggtc
tctgctggattcgatgctgcagtcggagatgagaagggggagatgtgtgtgagtcctcag
tgtttccatgctctgactcacatgttgatgagtttggctgaaggtcgactcgttctcgct
ctcgagggaggttataacctgcagtccacagcagagggcgctgcagcctgtgtcagtgct
ctgctgggaggagcatgtcctcctctgactcctcccacagctccatctgacagtgctctg
cagtccatctcccagacagtcactgctctgtatccacactgggcctctctacaagtactg
gaaggcagctcattggctgaaggcagagtcatcagagcaacaaccaatgaggagagcaca
aagcagaacagccccgccccctctgttgccacgacaacaggtctggtttatgatgagagg
atgatggagcacctgaacatgtgggacaggcatcatcctgaacagcctcagaggatctcc
aagatcttctccagacatcagcagctgggattggtcgatcgttgccaacggataccagct
cgcttagcaacagaggaggagctgaccatgtgtcacagtgtgcagcacattgagcagatg
agagccacagcagtgatgaagcccagagatctgcacaaactaggcgaagagttcaactca
atctacatcaacaaccagagcttcaagtctgctcagctgtctgctgggagctgcttcagt
gctgtggagaggatcctgagaggacaggtgagtaatggtgtggccatcgtccggcctcct
ggtcatcatgcagagagagactctccttgtggtttctgcttcttcaacaccgctgcactc
gtcgctcgccatgcccagaaaatctcccatcatgcaccgttgagagtcctcatcctggac
tgggatgttcaccacggcaacgggacacagcacatgttcgaggatgacgacagcgttctg
tacatctccctccatcgctatgacaatgggacattcttcccgtcttcagaggatgctgcc
cccgaccgtgtgggcgtggccagaggggcggggtttaatgtcaatgtggcatggagtgga
ggaagaatgggtgactctgactaccttgctgcttttcaccacgttgtcatgccaatcgct
accgagtttaaccctggtctggttctggtgtcggctgggttcgatgcagctcggggggat
ccgctaggtggatataatgtgaccccggagggatatgcccaccttacacacctgctgatg
tcactggctggggggagggtcctactcatcctggagggaggctacaacctgtcatccatc
tctgactccatggcaatgtgcaccagcgtgttgctaggagaccctcctccatccctggtg
actcccttcccccctccccatcacagtgccgtggcgtcgatcaatgaggttatccgacac
cacgccccctactggaggtccctgaggatacacatcacagagtctgttcgggcttccttg
ccatccccgaagcatcgtgggaaacgtagttctaaaggaaaaggcaggaagtcagagcag
agaacctcagacaaacctccgctaccccccacaggaccaggggacaccacgatagagcgc
aatctggaccaactcactgagggactggccagtttggacatcagtcagacctcagccaat
cacactcctgctacatccactccagtgggcggggccaggccgaaggtacgcctgagccca
gagaaggttacctgtgaaggtgaagtgaaggcggagtctaatgcagccacacctgagaag
agccaatcagcagacagcacaccatctcagactcagactgttgccatggcagcgtcagag
ttggctgctattggtgacgaggctgctggtggagcggggatggagggtgaggcagaggga
gcgtgtggttggtcgaggcctgagatgaatgtggagctgctgtgtggaggacagacagac
ggatctactctgtatgtggtcgaccctctgtcctggtgtcctcacctggatgccgttaag
cccctccccccctcgaatatagacgtccacctgccgtgtcaggactgtggctccgatgct
gagaactggatctgtctcacctgctaccaggtgttctgtggtcgttatgttaatgaacac
atggtgactcacggtgctgtgtctgaacacccgatggttctgagcttctctgatctctct
gtgtggtgttacctgtgtgaggcctacgtacacaaccagattctgtttgaggctaaaaac
gctgctcactgtgccaagtttggagaggagatccctccatggagctaa
DBGET
integrated database retrieval system
