Seriola dumerili (greater amberjack): 111236312
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Entry
111236312 CDS
T05606
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111236312
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sdu03041
]
111236312
03009 Ribosome biogenesis [BR:
sdu03009
]
111236312
Enzymes [BR:
sdu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111236312
Spliceosome [BR:
sdu03041
]
Complex A
U1 snRNP components
U1 related factors
111236312
Complex B
111236312
Ribosome biogenesis [BR:
sdu03009
]
Eukaryotic type
Pre-60S particles
Helicases
111236312
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
111236312
NCBI-ProteinID:
XP_022620719
LinkDB
All DBs
Position
Unknown
AA seq
635 aa
AA seq
DB search
MPGFSDRDRGRDRGYGGGPPRFGGGGGGNRGGPPPGKFGNPGERLRKKHWNLDELPKFQK
NFYQEHPDATRRPLQEVEQYRRSKEVTVKGRDCPKPIVKFHEAAFPSYVMDVIVKQNWTE
PTPIQSQGWPVALSGKDMVGIAQTGSGKTLAYLLPAIVHIQHQPFLEHGDGPICLVLAPT
RELAQQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGK
TNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQTLMWSATWPKEVRQLAEDFLKD
YVQINIGALQLSANHNILQIVDVCSDMEKEDKLIRLLEEIMSEKENKTIIFVETKRRCDE
LTRRMRRDGWPAMGIHGDKSQQERDWVLNEFRYGKAPILIATDVASRGLDVEDVKFVINY
DYPNSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQASDLISVLREANQAINPKLIQMAE
DRGGRGRGGRGGYKDDRRDRYSGGGRSNFGGSSYRDRESDRGFGSGPKSAFGGSKAQNGG
SYGGNSGNSGGSYGNNNYSNSNGQGNFGAPANQVGAFGNQSFQGPPQFGAMQRAAQNGMN
HPPFPFNSQPPPPQAQQPPPPPPMVPYPMPPPFPQ
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgcctggcttttcagacagagatcgtggcagagatagagggtatggaggaggaccccct
cgttttggtggtggtggaggaggcaataggggcggaccccctccaggaaagtttggcaac
cctggtgagaggctgcgaaagaagcactggaaccttgatgagcttccaaagtttcaaaag
aacttctaccaggagcacccagatgccacccgcagaccacttcaagaggttgagcagtac
agaagaagcaaagaagttacagtcaaaggcagagattgcccaaaaccaattgtaaaattc
catgaagctgcgtttcctagctacgtcatggatgttatagtcaaacagaactggactgaa
ccaaccccgattcagtctcaggggtggcctgttgccctcagtggcaaagacatggttggc
atcgcacaaactgggtctgggaaaacccttgcataccttttgcctgcaattgtgcacatc
caacatcagccattcttggaacatggagatggacctatttgcttagtgttggcaccaact
cgtgagctggctcagcaggtgcaacaagtggctgctgaatatggcagggcctcccgtctc
aagagcacctgcatctatggtggtgcacccaaaggaccccagatcagggaccttgagagg
ggtgttgagatctgcatcgccaccccaggtcgtctcattgacttcctggagtgtggtaag
actaatttgcgccgttgcacatacctggtgctggatgaagctgaccgcatgctggacatg
ggattcgaacctcaaatccgcaaaatagttgaacaaatccggccagaccgtcagaccctg
atgtggagtgccacctggcctaaggaagttcgccagctggctgaggacttcctgaaggac
tatgtccagatcaacattggagcactgcagctcagcgccaatcacaacatcctacagata
gttgatgtttgcagtgacatggagaaggaggacaaactgatccgtttgctggaggagata
atgagtgaaaaggagaacaagaccattatatttgtggagaccaaaaggcgttgtgatgag
ctcaccaggaggatgagacgagatggttggccggccatgggaattcatggagacaagagc
cagcaggagagggactgggtccttaatgaattcagatatggcaaagctccaatcctcatt
gctacagatgtggcctcccgtggcttagatgtggaggatgtgaaatttgtcatcaattat
gactaccctaactcctccgaggattatatccaccgaattggacgcacagcccgaagtcaa
aaaacgggcacagcctacaccttcttcacccccaacaacatgaaacaagccagtgacctg
atctctgtgctccgcgaggccaaccaggccattaaccccaagctgatccagatggcagag
gacagaggaggtcgtggaagggggggaagaggtggctacaaggatgaccgtcgcgatagg
tattctgggggtgggaggagcaactttggtggtagtagttacagggacagggaaagtgat
agagggtttggcagtgggccgaagagtgcctttggtggcagcaaggcccaaaatggtggc
agctatggaggcaacagtggtaactctggtggtagctatggcaacaacaattatagcaac
agcaatggacagggtaattttggtgctccagcaaaccaggtgggtgcctttggtaaccaa
agcttccagggcccccctcagttcggggccatgcagagggccgctcagaatggcatgaat
cacccgccattcccattcaattctcagccgccaccaccacaggcccaacagccaccaccc
cctccaccgatggtgccctaccccatgccaccacccttcccacagtag
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