Seriola dumerili (greater amberjack): 111236396
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Entry
111236396 CDS
T05606
Symbol
vps8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
111236396 (vps8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sdu04131
]
111236396 (vps8)
Membrane trafficking [BR:
sdu04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
111236396 (vps8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
TPR_Vps41
Beta-prop_WDR36-Utp21_1st
WD40_CDC20-Fz
TPR_VPS8_2
zf-RING_Vps41
Clathrin
zf-RING_UBOX
zf-RING_11
zf_RING_Vps8_fungal
zf-RING_5
zf-RING_2
ANAPC4_WD40
Beta-prop_WDR5
Beta-prop_THOC3
Beta-prop_EML_2
Beta-prop_WDR3_1st
zf-C3H2C3
WDR55
zf-rbx1
zf-C3HC4
Beta-prop_HPS5
EIF3I
WD40_Prp19
Motif
Other DBs
NCBI-GeneID:
111236396
NCBI-ProteinID:
XP_022620809
LinkDB
All DBs
Position
Unknown
AA seq
1405 aa
AA seq
DB search
MSESPDARSLLSASSQLNLMEVDVIDDKEFDIPQVDTPPTLESILNELEDEEEPFVLEDT
CVLSTDNMDAHSCDTSSLASSDSGDPTHLKRKRRTVDLNTTVHGSVLRHSLLKGISAQIV
SAADKVDAGLPTAITVSGVIAVGTSHGLALVFDTNQALRLCLGTKMTGAEFGAVSALSIN
HDCSRLLCGFAKGQITMWDLANGKLLRTISDAHPPGTAILHVKFTDDPTLAVCNDSGGSV
FELAFRRVMGMRSCDSRCLFSGSKGEVCCIEPLRAPPDIRDHPITHYSLLAMASLTKILV
IGLKPSLKVWMTFPHSKSDPSSVPQLAWQFVPVQKTVNPVLAFCKGDTVHFLLVKKEESG
TIHVIKQRQLHLSCDIISLSWINSRTLVLVDSHEKLHIVDRPSQEVLETLDLEQVQLVYN
SRHFKSLATGGNVSQALALVGEKACYQSVSSYAGQIVYLGTKSAHIMTLRNWRERIDCLL
KQEHFVEALSLAWSFHEGTAKAVVGLFGDPIKRKGVVDDKMVEILCQFAEHSLKKCPEQG
KIQVMEQHFHDVVPVMVDYCLLLQREDLLFNQLYARLVENMVAKGVFLEALESYIVADRL
GHLTTPIMRDLLAHYHGNGMMDSLERCIVHLDVTSLDIQQVVQVCWENQLYDAMIYVFNS
GMNDYITPMEKLFAVIGPPLREGRSLTDEEVVMGNKLLVYVSCCLAGRAYPLGDIPEDLV
VQVKNQVFEFLIRLHSAESSEEEEVFPFIRTLLHFDTREFLNVLAMTFEDFKNDKQALEY
QQRIVDILLQVMVDNPDFTPSQVGGLFTFLARQLAKPDNTLFVNRKLFDQVLEFLCCPDD
DSRHTERQQVLLELLQVGGVVQFNEGRLLALAEKAKFYQICECLYEKQHLYDRIVDCYLR
DPLRKVEIFSYIHNLLSMPGYSPEEQQTVKDKVLQHVQELVTLDPSRSADMVVFHFTEEV
QQIISELKDDQLLFQFLSCLLEPREGHHSGTVLPLERELHKLLLDLLCRFAPQQLLSFLQ
TSQYYRLEEAIQTTEKYHHSEATAYLLEKKGDVHGAFFVLLETLKDELCLLTAEKETGIE
GPEGGHGEDENPRDSTLTRVKDSLNDIIALCHRNSHNLYQQQREALWFPLLETMMASQKL
VKGFDSKYTSEVLKELTMKVLNCMSCFISLPAIIQRILQDPVYGKGKLAEIQGLILGMLD
TFNYEQTLLETTTSLLNHDLHWSLAHLRAAVTRGLHPRQDYCNICLQQYKRRQDSAEEII
VFSCGHLYHFQCLQQKDCGWGISLELQQRWSCYKCSSSQGGRGGASTEPKKGRSTSLAQT
RVTSMHHDAGAEVHRKKVFVEATLDHQQEQSWDQLRSLYRGPSRLSILSDLSLCHSSEKS
GFLLPVHPGTETFQLKLSPPPLLEE
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atgtcggagtctccggacgcccgcagcctgctctctgcctcctcccaactcaacctgatg
gaggtagacgtgatcgatgataaggagtttgatattccccaagtggacacaccccccaca
ctggagagcatcctcaatgagctggaggatgaggaggagccattcgtgttggaggacacc
tgtgtgctcagcacggacaacatggatgctcactcctgtgacacgtcctctctggccagc
tctgacagtggagacccaacacaccttaaacgaaaacggaggacagtggatctgaacacc
acagttcatgggtctgttcttcgacacagtcttttgaaaggaatctctgctcagatcgtc
tctgctgctgacaaagtggacgcaggactgccgactgctataacagtgtcgggtgtgatt
gctgtggggacgtctcatggtctggctctggtctttgataccaaccaggccctgcggctc
tgtttgggtaccaagatgacgggggctgagtttggagctgtgtccgctctcagcatcaac
cacgactgctcacgacttctctgcgggtttgccaaaggacagattaccatgtgggatcta
gccaatgggaaacttctgaggactatcagtgatgctcaccctccagggacagccatattg
catgtgaagttcacagatgacccaactcttgccgtgtgtaatgacagtggaggatcagtg
ttcgagttggccttcaggagggtgatggggatgcgatcctgtgactctcggtgtctcttc
agtggctctaaaggggaggtctgctgtattgaaccactgcgtgctcctccagacatcaga
gaccatcccatcacacactactcattgctggctatggcctctctcactaaaattctggtc
attggactaaagccctccctgaaagtctggatgacctttccccacagtaagtctgacccg
tccagtgttcctcagctggcctggcagtttgttcctgtccagaagacagtcaacccagtc
ctggcattctgtaaaggagacacagtccacttcctcctggtgaagaaggaggagtcgggg
accattcatgtcatcaagcaaagacagctccacctcagctgtgacatcatcagcctgagt
tggattaacagtcgcacgctggtcctggtggatagccatgaaaaactgcacattgtggac
cgtcccagtcaggaggttttggagactctggacttggagcaggtgcaactggtctataac
agccgacatttcaaatcgctggccactggagggaatgtctcccaggctctggctttagtt
ggagaaaaggcctgttaccagtctgtctccagctacgcaggacagatcgtctatctgggc
accaagtcggctcacatcatgactctaaggaactggagagagcgtatagactgtctgctg
aagcaggagcacttcgttgaggcactctctttggcctggtccttccatgagggaactgct
aaggctgtggttggcctttttggagatcccataaaaaggaagggagtggtagatgacaag
atggtagagatcctttgccaatttgcagagcattctttgaagaaatgtccggaacaaggc
aagatccaagtgatggagcaacatttccacgatgtggttcctgtcatggtggattactgc
ctcctgctacagagagaagacctgctgttcaaccagctgtatgctcggcttgtggagaac
atggttgctaagggtgtttttctggaggcgctggagtcatacattgtggcggaccgcctt
ggtcaccttaccacacccatcatgagggacctcctggctcattaccatggcaatggtatg
atggacagcctggagagatgcatagtccatctggatgtcaccagcctggacatacagcag
gtggttcaagtgtgttgggagaaccaactttatgatgcaatgatctacgttttcaacagt
ggcatgaatgattacatcacacctatggagaaactctttgcagtcattggaccacctctt
agggaggggaggagcctaacagacgaggaagtggtgatgggaaacaaacttctggtgtac
gtaagctgctgtcttgcaggaagagcgtatccactgggagacatccccgaagaccttgtg
gttcaagtcaagaaccaggtatttgagttcctgattcgtctccattcagctgagtcatca
gaggaggaggaggttttcccattcattcgtacactcctccactttgacacccgagagttc
ctcaatgtcctcgccatgacatttgaagactttaagaatgacaagcaggcccttgagtac
cagcagaggatagtggacatcttacttcaggtgatggtggacaacccagactttactccg
tcccaggtgggcgggctcttcacttttttggctcgacagttggccaagccagacaacacg
ctttttgtgaacaggaagctctttgatcaggttctggagttcctgtgctgcccagacgac
gactctcgacacactgagaggcagcaggtcctgctggagctgctacaggttgggggtgtg
gtccagtttaatgaaggcaggctgttggctttggcggagaaggccaagttctaccagatc
tgtgaatgtttgtatgagaagcaacatctgtatgacaggatcgttgactgctacctgaga
gacccactgagaaaggtggagatcttcagctacatccacaacctgctgtccatgcctggt
tacagccctgaggagcaacaaacagtcaaggacaaagtactacagcatgttcaggagctg
gtgacccttgaccccagcaggtcagctgacatggtggtgtttcacttcactgaagaggtg
cagcaaatcatctctgagcttaaggatgaccagctgcttttccagttcctcagctgtctc
ctggagcctcgggaaggccatcattcagggactgtcctgcctctggaacgtgaactccac
aagcttctgctggacttactgtgccggtttgcaccccagcagctgctgagcttcctccag
acctcccagtactacagactagaggaggccatacaaacgacagagaagtaccaccacagt
gaggccacagcctatctgctggagaagaagggggatgttcatggagctttctttgtcctg
ttggagacactgaaggatgaactgtgtctcctcactgctgagaaagaaacaggaattgaa
ggacctgaaggaggacatggtgaagacgagaatcccagagactcaactctgaccagagtg
aaggactcactcaatgacattatcgccctgtgtcaccgcaactctcacaacctctaccag
caacagagagaggctctgtggtttcctcttctggagaccatgatggcttctcagaaacta
gtgaaggggtttgattccaaatacacctctgaggtgctgaaggagctgacgatgaaggtt
ctcaactgtatgagctgcttcatctctctgcctgccatcatccaacgaatactgcaggac
cctgtctatgggaaaggaaaactggcagagatccaaggcctcattctgggtatgctggac
acctttaactatgaacagactttacttgaaacaacaaccagtctgttgaaccatgatctc
cactggtccttggctcacctgcgtgctgctgtcacaagaggactccacccacgacaagac
tactgtaacatctgcctccagcagtacaagaggaggcaggactcagctgaggagatcatt
gtgtttagctgtggccacctgtaccatttccagtgcctgcagcagaaggactgtgggtgg
ggcatttctttagagctgcagcagcggtggagctgctacaagtgttcatccagccaagga
ggaagaggcggggcttccaccgaaccaaagaaaggccgcagcacgtccctggctcagact
cgtgtcacatcgatgcatcatgatgcaggagcagaggttcacaggaagaaggtgtttgtt
gaggcgacactggaccatcagcaggagcagtcctgggatcagctacgctctttgtaccga
ggaccatccaggctgtccatcctctcagacctttccctctgccacagctctgagaagtca
ggatttcttctcccagttcacccaggaacagagacattccagctcaaactctctcctcca
cctctgctggaggagtag
DBGET
integrated database retrieval system
