Seriola dumerili (greater amberjack): 111236397
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Entry
111236397 CDS
T05606
Name
(RefSeq) collagen alpha-1(XIII) chain-like isoform X1
KO
K16617
collagen type XIII alpha
Organism
sdu
Seriola dumerili (greater amberjack)
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sdu00536
]
111236397
Glycosaminoglycan binding proteins [BR:
sdu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111236397
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
DUF6526
Motif
Other DBs
NCBI-GeneID:
111236397
NCBI-ProteinID:
XP_022620812
LinkDB
All DBs
Position
Unknown
AA seq
717 aa
AA seq
DB search
MEQDRKWGDTGKPGEEWRSHGEQQQQQQQKPPLWRNWRDLSGVAICIVLSVLCLGVCIVV
FVRTSELQSRIVSLEQQQRDAQLSAWRLSLEQVEPIILGRLDQILEEKLAVKLPKTREVR
EAPHSCLCPPGPPGPPGRAGFPGAPGEPGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGKP
GQNGLKGDMGQRGPKGQPGEPGSKGEKGVCGDYTHRGLFAQDVPLKTLAALRYNQAVMLK
QGEPGAQGPPGPPGPPGLPGTPGLNGASGSPGKPGEPGKPGKDLRLLPGLKGEPGVPGQK
GDQGDVGPPGPDGPKGVKGDQGMKGEPGFPGTPGLKGQAGISGTPGIPGKRGYRGEKGEP
SIAAQGIKGEPGSLGLPGLMGPKGEKGDHGDKGEVGPEGPAGTRGPQGPTGEPGKAEIHN
NENDIHNIPLMGPPGLPGPPGPPGLTGAKGEVGLPGPPGLDGEKGPRGKPGEPGPAGPRG
EDGVEGFPGPKGDMGPAGSPGPKGESGEGARSERIYGPPGPPGPPGPVGPAGSQGPSGPK
GEPGIGIRGEKGATGQKGEKGDRGHLGLPGAHGLDGRPGPVGLIGPAGVPGPAGPKGDRG
EKGDAGLPGPTGPQGIPGLVGPQGLKGNRGERGKKGNRGAKGDKGDQGAPGLDAPCPLGF
RGFKGEKGEPGLPGLDGLDAPCPVGDDGLPVPGCWNKLLSEAVDVFGLFISSSKHQK
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atggagcaggatcggaagtggggagacactggaaaaccgggtgaggagtggaggagccac
ggcgagcagcagcagcagcagcagcagaaaccgccgctttggagaaactggagagatttg
tctggcgtagcgatttgcatcgtactatctgtcctttgccttggagtttgcattgtggtt
tttgtgcggacctcggaattgcagtccaggattgtaagtctggagcagcagcagcgggac
gcgcagctctccgcgtggaggttgtctctggagcaggtggagcccataatccttggccga
ctggaccagatcctggaggagaaacttgcagtaaaactaccgaagactcgggaggtgagg
gaagctccccacagttgcctctgtcccccaggacctccaggtccacctggacgagcaggc
tttccgggagcaccaggcgagccaggtctgtctatcattggaccaagaggacctcctggc
caacctggaacaagaggatttccaggctttccagggccaattgggttggatggcaagcct
ggacagaatggactgaagggagacatgggtcagcgtggtcctaaaggacagccaggggaa
cctggatctaaaggggagaagggcgtctgtggagattacacacaccggggcctctttgca
caggatgttccattgaaaaccctggccgccttgcgctacaatcaggctgtgatgttgaag
cagggcgagcctggagcgcagggacccccgggacctccaggaccccctggactgccagga
acaccaggcttgaatggagccagtggctccccgggtaaacctggtgagccgggaaaacca
ggaaaagacctacggcttttaccaggactcaagggtgagccaggtgtgccaggacaaaag
ggtgatcaaggcgatgtaggcccaccaggtcctgatggcccaaagggagttaaaggtgac
caaggaatgaagggagaaccaggtttcccaggcactcctgggttaaagggccaggctggc
atctctggtacccctggcatccctggcaagaggggctacaggggtgagaagggagagcca
agcattgctgcccaaggaataaaaggagaaccaggttcattgggactgccaggcctaatg
gggcccaagggtgaaaaaggtgaccacggagacaagggggaagtaggtcccgaaggccca
gccggaacaagaggtcctcagggcccaactggggagccgggaaaggctgaaatccacaat
aatgaaaatgatattcacaacatacccctgatgggtccccctggattacctggacctcca
gggccccctggcctcactggtgcgaagggtgaagttggactaccaggtccaccaggactg
gacggtgagaaggggcccagaggaaagcctggagagcctggtcctgcaggtcccagaggg
gaggacggtgtcgaaggcttcccaggacccaagggggacatgggtccagctggatcacct
ggtcctaaaggcgaatctggagaaggagctaggtcagaaagaatctatggtcctccaggg
cccccaggacctccaggaccagttggcccagcaggatctcaaggaccttcagggcctaag
ggagagccaggcataggcatcagaggagaaaagggagcaacaggtcagaagggcgaaaag
ggagacagaggccatcttggactgcctggggctcatgggttagatggcagaccaggccca
gtgggtctaataggaccagcaggtgtgccagggccagcaggaccaaagggagatagaggt
gaaaagggagatgcaggattaccaggaccaactgggcctcaaggcatccctggtttagta
ggaccacaaggactcaaagggaacaggggagagaggggcaagaaaggcaacaggggggcc
aaaggggataagggagaccaaggagcacctggattagatgccccctgtcctttgggtttc
cgtggctttaaaggggagaaaggtgaaccaggcttgccaggcctggacgggctggatgcc
ccttgccctgtgggggacgatggcttacctgtaccaggatgttggaataaacttctgtct
gaagctgttgatgtgtttggactgttcatatcatcttccaaacatcaaaagtga
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