Seriola dumerili (greater amberjack): 111237247
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Entry
111237247 CDS
T05606
Symbol
pkd1l1
Name
(RefSeq) polycystic kidney disease protein 1-like 1
KO
K04987
polycystin 1L1
Organism
sdu
Seriola dumerili (greater amberjack)
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
sdu03037
]
111237247 (pkd1l1)
04040 Ion channels [BR:
sdu04040
]
111237247 (pkd1l1)
Cilium and associated proteins [BR:
sdu03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
111237247 (pkd1l1)
Ion channels [BR:
sdu04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
111237247 (pkd1l1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
REJ
PKD
Polycystin_dom
PKD_4
PKD_channel
PLAT
GPS
ig
Init_tRNA_PT
Sap1
Motif
Other DBs
NCBI-GeneID:
111237247
NCBI-ProteinID:
XP_022621987
LinkDB
All DBs
Position
Unknown
AA seq
2861 aa
AA seq
DB search
MGCVNDSDSSFLRLYTAKGAHDLDPVTCSVRCLDEGVLYLPVGGEQGIVALYRTEGPFLH
SLSLSSSVDRVQAGKTFVVEVSGSLAGRPNQPTGIWSLGRQDLFYVTMEFLDTTPKDVRV
SNLLSTLSSTLHLSVLQHSPDGLVISVLHGPLGVPSCVHLQQTDSHSVAMQAAYLGDPVT
LQAYVVVSPTVSDLKVSVSRNHLRTGECISVDVELFTTMKHLLALNLTLNAEYDHNYENS
GEPSSKGQDIETCCGGNIDINTRRFDSSDMKNNISKDDMRIYAEKQAYPTNTDITFLALA
DVPDLVEFIWHFGDSTSARSTSSTITKRYHKPGRFDVVAVTSSSHTSITSEVFPLAVERA
VKLNRLVHQASVLQNETVTISCRVNVGTNLTFLWNFGDGSSRLGQSTEQHVFHRRGEFRV
EVTVSNLVSSASLSSHIFVVDRPCQPPPVKNMGPLKLQVRRYEVIYLGVTYETEIDCDIS
GGLQYTWTLFDSAGQTYYLPQTDTHRQSLTLQSHLLHYDTYIAIARVQVIGSVVYSNYSL
RVQVMPSPPVAFIQGGTNVFINKRNTTVVTLDGQKSYDPDFPMNPLSYRWTCKPLSSITT
SCFNQYIPTSSPVLTFPVSFLKHNFDQFQFTLTVHSGERSASSETFLTIIPNLLGKVSVY
CPHCHGDQVNWDKSFSVSTLCEDCNVSPKHIHYTWSLYWVNASSRPVIEVPFCSTVDLNS
PSTIIKSPESFPQTLETFTLHPSDTDTSHYTRDEPFYHSLGKFDLPKHQTSTEYPPLTVD
NSGVLYSEHFGQSDVISEFPGHSDSSAEWEFSFAVLENGDKGGQPDSDYDVPFLSAEEGD
PGISAGRPTDLDGETFSPGYDSVSDPAVYDEGSNLVVPGSAMVIQEPTLLDLPRDPVDKG
LFESYTYTGISSPFLSFRPFSLRPGSRYMLEVTAKSHHSFLGRTQLFLKTKPAPKGMTCQ
VQPDKGMELHTHFSIFCASGKEDLLYEHSFSVGSRPPKVLYQGRDFQYYFSLPSGDPSDD
YKVTIYTEIRSSTYGTATKPCPVTVQVQPSFLRDTSSHDDPDLELSGSGLRNLSALVRLG
NSREIRNYISLLSSILNRLSLDTKANTHAQIHLRNVLISTVCELESSEQASMVDGICALK
DLLQVTNQVTLASARQVAVHVQAISDLFLESRAPVQYHLDHRTLNTLVVLLSYILQAAAS
ATSDHIKLGGSPATNQMAQLVVDTLQTASDLMLKYILFHKVQEHRVRTDPITLYATYQNQ
TSTVISSGSTTFYISASLIQLLFVRHSGGTESRQPCVLSVATELARSPYTCAQHPTQLSG
PVVDLSLYNCSVRRKIPVRSLILPINVELQQPPGNSSVHEYILLRTQVNYHSFNITQDHL
EQAIQLSMVFTPPPNKVFPIMLLFRMFERPTPSINHLHRIHHWETNTIRITLPPSYLNAA
GVGHLALLNADFGKAPRHKYLSEQISYSLTVVSSLCLSWDGHQGAWTHQGCRTQQADTAS
AVNCSCHQLRPMTVVQHQIQSSRDTADLDPFLSASCNLTVLGVLVLCVCLYIPGLAVCKR
ADDMFKKNQRVHYLSDNSPFDSYLYAITIHTGLCSAANMSAKVYIVLYGEDGFSHTRELQ
VPGCTLFRRNSQVTFIVSTADSLGRVWGVHIWHDSSGPSPTWYLRQVEVSEMNRGHVKGR
AWLFVGQCWLAVNKGDGQVERMLRVCTHGLGFTKMLCFKLSNYLADFHIWMSVYSCPCPN
LFTHTQRLSVCLLLLLGYACINTVIISQIDAELPFELGILDVSAVSVTTGALSVVAVLPG
ATMISFLFRLHGVKLRRSGVQHAKDALSVNDSTLHLSWSSLKQWMQGAWRKKYQGTDVLS
VSPTILENKDTDKEPVIQPDVIIRKEDDPAVERSMGPVLQNLVLISEENNADRANQGKAF
DLLSESNKFHGTQKDLLSNMREENRAIQKEKDPQGICSSDCGFEEGSHHQAAWCGHSSGY
HIIDTMKGRKVGPTSQWCHYLAWAFCLLLSLSCLVLSAVLGMRFSSSKVLIWIHSLFFSL
MSCIFFIQPAVILTVAVTVSFWYRKRPDFHTFSRIKELEAAHQPEEQFRISAFPQERCSY
LEKLLAARQRARYLRLVRPLTPAELRKTRGRKRREILIHNTLRDLSVCVSMAFLMLCVTY
GSSVSDHYHLNKAVRKQFIRNDDIDFMSIQNHEDWWKWTQTSLLNLLYKNASATTEQRSH
ILIGEAILWKEEASSSFWDKVYSVTLVPEGLRSFLSGRGTSSYPLSIVTTPTATPLTTCG
HLGCSSWPNATVGLGRTKSDAASKLNLLHSCGWLGRQTVALKVQFTLFSPAPNLFTSVTL
LTEQSPINVLLPSFKVQSVRVYHTPAVWDYVVMVCQLLFLLLSLLQLCHQVCTMRQQGLM
GYWRTPCNWLEVTLLKVILVYYVYYIYHSIIIMDVVEVLQRHRGHVDVSFLATWEQDIRT
LRGLTLFLLITKCMTMLRVNRTLAIPVTLLTRSLSSLFWPTISGLILLVALSCAGNLLFV
QSSWAFSSIPRSLQSLLCQYSGLRPARGLLLSGHHFLYSGAFYLSSTVVWTAVVIGVVSS
LVRSVRRSQRRKDVFTVAEFASYIRKRISEFTGQRGSTWIDNHVESRTYYLEEFESLVDE
LLFRLSALCNCLHHTLPPKAHDYLEEESPISSPIQEPSNMDTKDFVRTQMTKETMVNDHT
DVSGHGETLPASQLSRSKLELEILQFLQQRGQQRNTPSSDIVLASDNLQHTGERAEENPN
DRELQTYFRGQNCLSLPESASLIRIWTDDVLETQSDHWTKTNESCWLSKTQATHTEVVVE
VLVHEEPVSVEPDKQEGPYGDDSSCWETSSNSKNKMSQKFA
NT seq
8586 nt
NT seq
+upstream
nt +downstream
nt
atgggctgcgtcaacgacagcgactcatctttcctcagactttatacagccaagggtgcc
catgaccttgacccggtaacctgctctgtgcgctgtctggatgagggtgtgctgtacttg
cctgttggaggcgaacaggggattgtggcactctacagaactgaaggaccatttctgcac
agccttagtctgtcctcctctgtagacagagtgcaggctgggaagacttttgttgtggaa
gtttctggaagcctggcaggacgccccaaccagcccacagggatttggagtctgggacgg
caggacctcttttatgtcactatggagttcctggacacgacccctaaagatgtcagggtt
tccaacctcctctctacactctcttccaccctccacctctccgtcttacagcactctcca
gatggcttggtgatctctgtgctccacgggcccttgggcgtcccctcatgtgtgcatctg
caacagacagactcgcacagtgtggccatgcaagcagcatacctgggcgaccctgtcaca
ctgcaggcatacgtagttgtgagtcctactgtttctgaccttaaagttagtgtttcaaga
aatcatctgagaaccggagagtgcatttctgtggatgtggagctgttcaccaccatgaag
cacctacttgccctcaacctcacactaaatgcagagtatgaccacaattatgagaacagt
ggcgaacccagcagcaaaggacaggacattgagacctgctgtgggggcaacattgacatt
aacacccgccgctttgacagcagtgacatgaagaataatataagcaaggatgacatgcgg
atttatgcagaaaaacaagcctatcccacaaatacagatataactttcctggctctggca
gatgtgccagaccttgtagagtttatctggcactttggagactccacatcagccagatcc
acctcaagcaccatcaccaaacgataccacaaacctggcagatttgacgtagttgcagtc
acgtctagttctcacacatccatcacctccgaggtgttcccgctggcggtcgagagagca
gtgaagctcaacaggctggtccaccaggcctcagtcctgcagaatgagacagtgacaata
agttgccgggtcaatgtcgggaccaacctcaccttcctctggaactttggagacggatca
tccaggctgggacagagcactgaacagcatgtcttccacagaagaggagagttcagagtc
gaagtgacagtgtctaacctggttagttctgcctctctgagcagtcacatctttgttgtg
gaccgaccttgtcagcctccaccagtcaaaaacatgggtcctctcaaactacaggtgcgg
agatatgaggttatatatctgggggtgacctatgagactgaaattgactgtgacatatca
ggaggtcttcaatacacctggaccctgtttgactctgcaggccagacctactatttgcct
caaacagacacacacaggcagagtctcacactgcagagccatctcttgcactatgacacc
tacattgccatagccagggtacaagtcattggcagtgtggtgtacagtaactacagtctg
agagttcaggtgatgccgagccctcctgtggcttttatccagggtggcaccaacgtcttc
attaacaagaggaacaccaccgtagtcaccctggatgggcagaaatcttacgaccctgac
ttccccatgaacccactcagctacagatggacatgtaaaccactcagctccatcaccact
tcctgtttcaaccaatacattcccacttcctcacctgtgcttacatttcctgttagtttc
ttaaaacacaactttgatcagttccagttcacgctcaccgtacacagtggagagcgttca
gcttcatcagagaccttcctcacaataataccaaatctgcttgggaaggtgtcagtttat
tgccctcattgccatggagaccaggtgaactgggataagtcgttctctgtcagtaccttg
tgtgaagactgtaatgtttccccaaaacacatccactacacctggagtctgtactgggtc
aatgcctcctccaggcctgtgatagaagtcccattttgttccacagtggatctcaattct
ccttccacaatcatcaagagtcctgaaagtttccctcagactcttgagactttcaccctg
catccatctgacacagatacttcacactacaccagagatgagcccttttatcattccctg
ggaaagtttgacctgccaaagcatcaaacctccactgaatacccaccactcaccgttgac
aacagtggagtcctttattcagagcactttggccaaagcgacgttatcagtgaattccca
ggtcactcggactcctctgctgagtgggaattttcttttgctgtcctggagaatggtgac
aagggaggacaaccagattcagattatgatgttcccttcctaagtgcagaggagggagac
ccagggatttcagcaggaagaccgacagatttggatggtgagacctttagtccaggatat
gactcagtgtctgatccagcagtatacgatgaggggagtaatctggttgttccaggatcc
gctatggtgatccaggagccaactttgctcgatttgccccgagacccagtagacaaaggc
ctttttgagtcctacacctacactggaatttcctccccttttctcagtttcagacctttc
agtctgaggccagggagcagatacatgttggaggtcactgccaaatctcatcatagtttt
ctcggccggactcagctattcttaaaaaccaaacctgctccaaagggcatgacgtgccag
gtgcagccggacaaagggatggagttgcacacacatttcagcatcttctgcgcctcaggg
aaagaggatttactgtatgagcacagcttcagtgtaggaagcagacccccaaaggtgctg
taccaggggagagatttccagtactacttcagcctgccttcaggtgacccaagtgatgac
tataaagtaactatttatactgaaatcaggagcagcacatatgggacagccactaaaccc
tgtcctgtcaccgtccaagtccaaccaagcttcctcagagacacttcttcccatgatgat
cctgatctggagctttcagggtcaggtctgaggaacctgtcggctctggtgcggcttggg
aacagtagggagattcgtaactacatcagtcttctctccagcattttgaacagactcagc
ctggacaccaaggccaacacacatgcacagatacatttacgcaatgttctcattagcaca
gtgtgtgagctcgagagcagtgaacaggcatcaatggtagacggcatctgcgctctcaaa
gaccttttacaagttacaaatcaggtaacattagcaagtgccagacaagtggcagttcac
gtccaggccatctcagacctgtttttggagtccagagctccagttcagtatcatctggac
cacaggaccctcaacaccctggttgtcctgctctcatacatcctgcaggctgctgcttca
gccaccagtgatcacatcaaattgggtggatcacctgcaacaaaccagatggcacagctt
gttgttgataccctgcagactgcgtcagacctgatgctgaagtacattttgttccacaag
gtccaggagcacagagtcagaacagatcctatcaccttatacgccacataccaaaaccaa
acctccacagtcatcagcagtggctcgaccaccttctacatatctgcttctctgatccag
cttctgtttgttcgtcacagtggaggcactgagagcaggcagccttgtgtgctcagcgtg
gcgactgaactcgctcgcagcccttacacctgtgcccaacatcctacacagctcagtgga
ccagtggttgacctgagtctgtacaactgcagcgtgaggagaaagatccctgttcgttcc
ctcattctgccaatcaacgttgagctgcaacagccaccaggaaacagctcggtgcatgag
tacatcctcctccgcacccaggtcaactaccacagcttcaacattacccaggaccacttg
gagcaggccatccagctgagcatggtgttcacgccaccgccaaacaaggtgtttcccatc
atgctgctcttcaggatgtttgagaggccgacgcccagcataaaccatctgcacagaatt
caccactgggagaccaacaccatacgcattactctgcccccatcctacctcaatgctgca
ggggttggtcacctggcactgctgaatgctgattttgggaaagcacccagacacaagtat
ctgagtgaacagatcagctacagtctcacagttgtcagtagcctgtgtttgtcctgggat
ggccaccagggggcctggacacatcagggctgcaggacacagcaagcagacacagccagt
gctgtcaactgcagttgtcatcagttgaggccgatgactgtggtgcagcaccagatccag
agcagccgtgacacagccgatctggacccgttcctaagtgcttcttgcaatctgactgtg
ctgggtgtactggtgctgtgtgtgtgcctgtacatccccgggttggcggtgtgcaagaga
gctgatgacatgttcaagaagaatcaaagagtccactatctttctgacaactctccattt
gactcatatctttatgccataaccatccacactggtctctgctctgcagccaatatgagt
gcaaaggtttatattgtgctgtatggtgaagatgggttctcacacacaagagaactacaa
gtcccagggtgcactctgttcaggaggaactctcaagtcacatttatagtcagcacagca
gacagcttgggtcgtgtgtggggggttcacatctggcacgacagctctggaccatcccca
acctggtacctcagacaagtggaggtatctgagatgaacagagggcatgtgaaaggacgt
gcttggctctttgtcggtcagtgctggctggctgtgaacaaaggtgatggccaggtggaa
agaatgctgcgtgtttgcacccacggattaggctttactaagatgttgtgttttaagcta
tccaactacttggccgacttccacatctggatgtctgtatacagctgcccctgccctaac
ttgttcacacacactcaaagacttagtgtgtgcctgctgctgctgttgggatacgcatgc
atcaacacagtaatcatatcacaaatagatgctgagttgccattcgagttgggtattctt
gatgtatccgctgtctccgtgacaactggagcattaagtgtggtggcagtgttgcccgga
gcaacaatgatatccttcctgtttcgactgcatggggtcaagctgaggaggtcaggagtc
caacatgcaaaggatgctctttcagtaaatgacagcacactccatctctcttggagcagt
cttaagcagtggatgcagggagcctggaggaagaaataccagggcacagacgtgctctca
gtgtctcctacgattctggaaaataaagacacagataaagaacctgtaatccagccagat
gtgatcataagaaaggaggatgatccagcagtagagcgcagtatgggaccagtacttcag
aatttggtgctgatttcagaggagaataatgccgatcgagcaaatcagggaaaagcattt
gatcttttaagtgaaagcaacaaatttcatggaacccagaaagatcttttgtccaacatg
agggaagaaaatcgagccattcagaaggagaaagatcctcaaggaatatgttcatcggac
tgtggctttgaggaaggcagccatcaccaggcagcatggtgtggtcacagcagtggttac
cacataatcgacacaatgaaagggagaaaagttggaccaacatcccagtggtgtcactat
ctggcctgggccttctgtctgctattgtccctctcctgcctggtgctttctgcagtgttg
ggaatgagattcagcagcagcaaagttctgatttggatacactcgcttttcttctccctg
atgtcttgcatcttcttcatccagccagctgtgatacttactgtggcagttactgtctcc
ttttggtacagaaaaagaccagactttcatactttctccagaataaaagagttagaggct
gctcatcagccagaagagcagttcagaatatctgctttccctcaggaaagatgctcatac
cttgaaaagctgcttgcagctcgtcagcgagctcgctacctacgtctcgtgcgcccactg
actccagctgagctgaggaaaacccgtgggaggaaaagaagagagattcttatccataac
actctcagggatttgtctgtctgtgtctccatggcttttctcatgctgtgtgtaacatat
ggcagctcagtcagtgatcattaccacctcaataaagctgtcagaaaacagtttataagg
aatgatgacattgatttcatgtcaatacaaaaccatgaggactggtggaagtggacacag
acaagtctgctaaatttgctgtacaagaatgcatcagccacaactgagcagcggtcacat
atcttgattggagaggcaatcctgtggaaggaggaggcatccagctcattctgggacaag
gtctacagtgtgactcttgtgccagagggtcttcgctcattcttgtcagggaggggaaca
tcttcttacccactttccattgtcacgactcccacagcaacacccctaactacatgtggt
cacctgggctgctcctcatggccaaatgctacagttggcttaggccgcacaaagtctgat
gctgcatccaaactgaatctcctgcattcatgtggctggttgggcagacagacagtggcc
ctgaaggtccagttcaccttgttcagccctgcacccaacttgttcaccagtgtgaccctg
ctcactgagcagagccccatcaatgtcctgttgccctctttcaaagtccaatcagtcagg
gtgtatcacactcctgctgtgtgggactatgttgttatggtgtgccagctcctctttctc
ctcttgtctctgctgcaactttgccatcaggtatgcaccatgaggcagcaagggttgatg
ggatactggaggacaccctgcaactggctggaagtcactctgctgaaagtgatcctagtg
tactatgtgtattacatctatcactccataattatcatggacgttgtggaggtgctgcag
agacacagaggacatgttgatgtcagcttcttggctacctgggaacaagatattcgtact
ctgcgtggtcttacactcttccttctcatcactaagtgtatgactatgttgagggtgaac
aggaccttggctatccctgttacactcttgacccgctcactctccagcctcttctggcca
acgatttcaggtctgatcctgctggtggcgctgtcttgcgcggggaatctcctgtttgta
caaagctcctgggctttcagctccatcccacgctcccttcagtctctgctctgtcagtac
tcgggtctcagacctgccaggggcctcctcctctctggacatcatttcctttacagtgga
gctttctatctgtcttctactgtggtgtggacagcagtggtgataggtgtggtgtcctca
ttggtcagaagtgtgagaagatctcagagaaggaaggatgtcttcactgtagcagaattt
gccagctacatcagaaagaggatttctgagttcactgggcagcgtggatcaacatggatt
gataaccatgttgagagcagaacttattaccttgaagagtttgaaagcttggtagatgag
ctgctgttcagactgagtgccctctgtaactgcctgcaccacaccctgcccccaaaagcc
catgactacctggaggaagagagtcccatctcctcacccatacaggagccctccaacatg
gacacaaaggactttgtaagaacacaaatgacaaaagagacaatggtgaatgatcacaca
gatgtcagtggccatggagaaaccctacctgcatctcagctgagcaggtccaagcttgaa
ctagagatactgcagttcctgcagcagagaggccaacagagaaacactccctcctcagac
attgttttagcatctgataatctgcagcatactggagagagagcagaagaaaatccaaat
gacagagagctccagacttattttagaggacaaaactgcctgtccctcccagagtcagca
tcgctcatcaggatttggacagatgatgttctagagacacaatctgaccattggactaaa
acaaatgagagttgctggttaagtaaaactcaggccactcatacagaggtggtggtggag
gttctggtacatgaggagcctgtaagtgtggagccagataaacaggagggtccctatgga
gatgacagttcatgctgggagacttcaagcaattccaaaaacaagatgtcccaaaagttt
gcatag
DBGET
integrated database retrieval system
