Seriola dumerili (greater amberjack): 111237285
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Entry
111237285 CDS
T05606
Symbol
rev3l
Name
(RefSeq) DNA polymerase zeta catalytic subunit
KO
K02350
DNA polymerase zeta [EC:
2.7.7.7
]
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
111237285 (rev3l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdu03400
]
111237285 (rev3l)
Enzymes [BR:
sdu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
111237285 (rev3l)
DNA repair and recombination proteins [BR:
sdu03400
]
Eukaryotic type
TLS (translesion DNA synthesis) factors
B-family DNA polymerases
111237285 (rev3l)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF4683
DNA_pol_B
POL3_N
REV3_N
zf-C4pol
DNA_pol_B_exo1
Motif
Other DBs
NCBI-GeneID:
111237285
NCBI-ProteinID:
XP_022622044
LinkDB
All DBs
Position
Unknown
AA seq
3019 aa
AA seq
DB search
MFAVRIVTADYYLARPIKDLDVCYSEFRESDVKKVPVVRIFGATPAGQKTCLHLHGVFPY
IYVPYDGHGQQPERYLRQVAFSIDRALNVAMGNPASSTQHVFKVVLVSGMPFYGYHNKEK
HFMKIYLFNPQMVKRVCELLQSGAVMSKSYQPHEGHIPYLLQLFIDYNLYGMNLVNLGAV
KFRRSQSKEVPDRQTPSRPSISPWKSPCTSKLNDSSLGGTFVRWEENAIPCSLVLDDVAK
QSTCELEVDAVAVDILNRLEIENQIGRNPGLQAIWEDEKQRRREKNQATQIETPESQDRE
FVTVTESEKIFMKRFKEILKENEFDVTQASSVGDEEDDHEDLPGDLTLHSDPLTPEGPLC
TPANAVEVHRDSQPDSVRNSGKIPEEAVVDEEAILSLLENSQTFLPLSQTSNHSPLLDSS
QDHAIIDLLAGLEDDGFCRTTVGQSSQPQSLPGARSYHCNSDEEEAEPELDRAEAELSVI
MSQRWDNEAPQRSSLQRHAEDGFSEEQQESSDEDMEWSGNNSLFANLSIPQLDGAADENS
DSSLTDSSSRTQSSLIVAEKMLGKRNPFPGETVHLEPPSSAKTLLEYKHPEHRPVHVLDT
EQPLDKHFQLKSSQDSSSECSTGFRVNKEIPYIPPVKHPIPCKIANHPEASPCVNKEDIQ
PLYTYDKKTSIALDKTELESFPFGNGQVTKSRKKYSSIKNVETNCLSILQNHRTFSLCYS
ELRNCSAKTELELSQKDGKSPILRNMSSAPSPMEEGEFLDPQEEEMGQDSEEGDVGELKI
RYEDYQENKTEKTIVAQQEAHYKFFPSVILSNCLSRKKAGSKKLTDSCSKSVEAQPRRSR
LKVNKRRLGMTGQRNKLNTVESSTSDSFTSITAAVDAEMPPSDERAEEAEPVQDEPVTEG
QTAAQEEPELEDGFESERTEPEAPEPALSNSTSTAVSCLSEEATDTAEDRLSPLQDLSAK
VTCTKPSALPGSKYTLRAKRKMIYDGEDGEHSGAARSKNPAAVKDSGKVKDSGVLGVQEA
KYQKRRKKEPPIIIKYIIINRFKGQKNMLVKMSKVNAEEPLVLLTPGKLDLYNKLAPLKD
FWPKVPESTAVRFPVAEPKAKKHPKRKAKVNATNKKTAGNVSRPRVRQGEGVRRTKGCQR
GPILPSLPPPRPCYCELADDHDVEYTDVMVELGYLSDRSPSPTDLTPPRCWSPSDPLMDG
SEQLINPLSDPCLSSAFHKPRAASSTTGARNKRQTARCKKPAESRRKVNKSATKPPEEGE
PRAAAARQRKKAKGAAEGPSNSPATATKPKRTRKKKTAEPKSLESSKDGSQLLFPEEEPP
PSESSSQELPPFQRAVSTDGDSQGAVQTAPTPDSSSDARSVEPKVEDCETSIMEVNRSLS
PHVKQQSCQTTVVKAEASQEECAAPPPPLAGRLLLEDGKEASPHSGPKNGEIPALCDTPS
GLTVLKQLLQKRQQGQTLPRQVVGAHSHSTAVAQAAALLDPTAKPAKSRKAPSTSQRKPR
APKPATPKSKKPRIRKGKTSGTQPDPTVKQEGNVSDDCPLFLSDPGLDACNFIEDSLSPE
LPHNYTFDINAIDQTEFSSPYSGSQFVLTDKNLPVKFLSDVSQEAVCAQSLGFEKKLDRL
FVCGEELQRGSDWHKARPASPDLFDRPENKESATNHLTFLDSERIKSREWDLSLCKAHSL
SPFQDFHCERKELLFSVFEPVLPLPLSSASFVDHEGSPTGDLLEGMDGLTSTTPSSSPRS
VGSLSQVRASQLLRGTGGGAHVLKPLMSPPSREEILNTLLDLEMSEATFQEPFCSDPSDA
PGKPMEVGGRKLTVGTRLTKELAEFSGELSLEGLCFWKTAFSAMTHPAANITSCSQAQGA
SEASKEPARRDPSSAGDKKVILLPCKNPPSRERVSLWLEARKQYECLQKWRRDTGLLKNN
GRAGLDFEEENPERSAQPSVKVELCGNLSGVRPQRRKKRSLSLIISPLKNTGSHSKSSQV
SPVSDEGAVDLEQEEQGKGDDGDDDDDDDKTTSPESPELPPWQQSCQPSPSGPDQLGSNR
QSEISPEPPSPRLSNSLERLGENRSPSRLRVSSNREDGRSSPHLLHSTPFSRRRRRSKED
VEPVCSTPISEESHGSQRLHWRRTSQADPLRRVLLTTQIKNQFAALNVPKKENSQIEGPS
IANSYGFKVSMQNLQEAKALHEVQYLTLMGMELHARTRRDLEPDPEFDPICALFYCLSSD
APLPDVDGTQLTGAIVVDKDYQSGDEGDRGTAPLLVRSGVSGLQVKCATDEKMLFQELIS
IMRRFDPDILLGYEVQMRSWGYLLQRAAVLGVDLCQQLSRVPGDSRENRFGADTDEYGAD
TMTEIHVVGRVTINLWRVMKTEVTLNNYSFENVAFHVLHQRFPLYSPRTLSDWFDHSTHL
YRWKTVDHYVSRVCGTMQLLQQHDIIGRTSELARLFGIQFFHVLTRGSQYRVESMMLRVA
KPLNYIPVTPSVQQRAQQRAPQCLPLVMEPESRFYSNSLVVLDFQSLYPSIVIAYNYCYS
TCLGHMDSLGTPDEFKFGCTSLRVPPELLYQLRNDITVSPNGIAFVKASVRKGVLPSMLE
EILSTRIMVKQSMKTYKQDKALMKLLDARQLGLKLIANVTFGYAAANYSGRMPSVEVGDS
IVHKARETLERAIKLVNDTKKWGARVVYGDTDSMFVLLKGATKEQAFKIGNEIAEAVTAT
NPKPVKLKFEKVYLPCVLQTKKRYVGYMYESLDQKEPVFDAKGIETVRRDGCPAVSKILE
RSIKLLFETRDISQVKQFVQRQCVKVLDGRASMQDLTFAKEYRGSGSYRPGACVPALELT
RRMMAYDRRLEPRVGERVPYVVVYGLPGVPLIQLVRRPMEVLQEPALRLNATYYVTKQIL
PPLARMFQLIGVDVFSWYQELPRIQKASCSSGGEEVGRKGTISQYFTTLHCPVCDELTQL
GVCSRCRAEPQRVAVTLYQDMRQWESQQDQLLKICRNCSGCAERQVPCVSLDCPVLYKLA
RVNRQLCKAPYLRQLLEQF
NT seq
9060 nt
NT seq
+upstream
nt +downstream
nt
atgtttgccgtgcgcatcgtcaccgcagactattacctggcaagacccattaaagacctg
gatgtctgctactctgaattcagggagagcgacgtgaagaaagtgccggtggtgcggata
tttggagcaacacccgcaggtcagaagacatgcctccacctccacggcgtgttcccttac
atctacgtgccgtacgacggccatgggcagcagccggagcgctacctgcggcaggtggcc
ttcagcatcgacagggccctcaacgttgccatgggaaaccccgcctccagcacccagcac
gtcttcaaagtggtgctggtctccggcatgcctttctacggctaccacaacaaggagaag
cactttatgaagatttatctgttcaatcctcagatggtcaaaagggtgtgtgagctgctg
cagagcggagcagtgatgagcaagagctaccagccccacgagggccacatcccctacctg
ctgcagctcttcatagactacaacctgtacggcatgaacctggtcaacctgggagccgtc
aagttccgcaggagccagagcaaagaagtcccagacaggcagactcccagtcgtcccagc
atcagcccctggaagagtccctgcacctccaagctcaacgacagcagcctggggggtacg
ttcgtccgctgggaggagaacgccataccctgctccttagttctggatgacgtggcgaag
cagagcacctgtgagctggaggtcgacgccgtggcagtagatatcctcaaccgcctggaa
attgaaaatcagattggcaggaacccaggcctgcaggccatctgggaggacgagaagcag
aggaggagggagaagaaccaggccacccagatagaaacccccgagtcacaagatcgcgag
ttcgtcactgtgacggagagcgagaaaatcttcatgaagagattcaaggagattctgaag
gagaacgagtttgacgtaacacaagcttcgtctgtgggcgacgaggaggacgaccacgag
gatttacccggtgacctcactctccattctgaccccctgaccccagaggggccgctgtgc
actcctgccaacgctgtggaggtgcacagggactcgcagccagactctgtgaggaacagc
ggtaaaatcccggaggaggctgtggttgatgaggaggccatcttgagtctcctggagaac
agtcagaccttcctcccgctctcccaaacatccaaccactcacctctgttagacagcagc
caagaccacgccatcattgatttgctggccggcctggaggacgatggtttctgcaggacc
accgttgggcagagttcccagccccagtctcttcccggcgccaggagctaccactgcaac
agtgacgaggaggaggcggagccggagctggacagagcggaggcagagctcagcgtgata
atgtcacagcggtgggacaacgaggctcctcagaggtcgtccttacagaggcacgcagag
gacggcttcagcgaggagcagcaggagtcctctgatgaggacatggagtggagtgggaat
aactctctcttcgccaacctgtccatcccccagctcgacggggcggcggacgagaacagc
gattcctcgttaacggacagcagctccaggacccagtcttctctcatagtcgcagaaaag
atgcttggaaagaggaaccccttccccggggagacggttcacctggagcccccctcctcg
gccaagacccttctggagtacaagcacccggagcacagaccggttcatgtgctggacacg
gagcagccgctcgacaagcactttcaattaaaaagcagccaggacagcagcagtgaatgt
tcaacggggttcagggttaataaagaaatcccctacatcccgccggtcaaacaccccatc
ccctgcaaaatagccaaccaccccgaggcgtcgccctgtgtaaacaaagaggatatccag
cccctgtacacctatgacaagaaaacctctatagccttggataagacagaattagaaagt
ttcccgtttggtaacggacaagtcaccaaaagcaggaagaagtacagcagcataaagaat
gtagaaacaaactgtctgtccattctccagaaccacaggaccttctctctctgttactcc
gagctgaggaactgctcggccaagacggagctggagctgagccagaaggacggtaaaagc
cccatcctgaggaacatgtcgtccgccccgtctcccatggaggagggggagttcctcgat
ccgcaggaggaagagatgggccaggacagcgaggagggtgacgtcggcgaactcaaaatc
aggtacgaggactatcaggaaaataagacggagaagactatcgtggcccagcaggaagcg
cactacaagttctttcccagcgtcatcctctctaactgcctcagccggaaaaaagctggc
agcaagaagctaacggattcgtgcagcaagtcggtggaagcccagcctcgcaggtccagg
ctaaaagtgaataaaagaaggttagggatgacgggacagaggaacaaattaaacacagtt
gaaagctctacctctgacagcttcacctcaatcaccgctgctgtggacgcagagatgcca
ccttcagacgaaagggccgaagaggcagagccggttcaggatgagcccgtcacagaggga
cagacggcggcacaggaggagccagaactggaggacgggtttgaaagtgaaaggacagag
ccagaggctcccgagcccgctctctccaactccacctccaccgccgtttcctgtctttcc
gaagaagctacagacacggcggaggacaggttaagcccgctgcaagatttatccgctaaa
gtcacctgcaccaaaccttcagctctgcccgggagtaaatacaccctgagggccaaacgg
aaaatgatctacgacggcgaggacggagaacactcgggtgccgctcgttcaaaaaaccca
gccgccgtcaaggacagcggcaaggtcaaggacagcggtgtcctcggcgtgcaggaggca
aagtaccagaaacggcgcaagaaagaaccccccatcatcatcaagtacattattatcaac
aggttcaaaggacagaagaacatgctggtgaagatgtccaaggtgaacgccgaggagccg
ctggtgctgctgacgccggggaaactggatctgtacaataaactggctcctctgaaggat
ttctggcccaaagtgccggaatccactgcggtcaggttccccgtcgccgagcccaaggcc
aagaaacaccccaaacgaaaggcaaaggtcaacgccaccaataagaagacggccggcaac
gtctccagacctcgagtcaggcagggcgaaggggtcagaaggactaaaggctgtcagaga
ggtccgatcctcccctctctaccgccccctcgcccgtgttactgtgagctagccgatgac
catgacgttgagtatacggatgtcatggtggagttgggatacctctccgatcgatctccg
agccccacggacttgacgcccccccgttgttggtccccaagcgaccctcttatggacggc
tctgaacagctgataaacccgctcagcgacccgtgtcttagctccgcttttcacaagccg
cgcgctgcgtcttcaaccactggagcgcgaaacaagcgtcaaactgcccgctgtaagaaa
cctgcagagagtagaaggaaagtaaacaagtcggccaccaagcctccagaggaaggagag
cccagagcggctgctgcgaggcagaggaagaaagctaaaggtgcggccgaaggtcctagc
aacagtcccgcaaccgcaaccaaaccgaagaggactcgcaaaaagaagacagcagaaccc
aaaagcctcgagtcgagtaaagacggctctcagctcctcttcccagaggaagagccgcct
ccttctgagagctcctctcaggagttgcctccatttcagcgggcggtcagcacagacggc
gacagccagggcgccgtccagactgcacccacaccagactccagctcagacgcccggtcc
gtagagccaaaggtggaggactgtgagacttcaatcatggaggtcaaccgaagcctctca
cctcatgtgaagcagcaaagctgccagaccactgtggtgaaggcggaggcgtcacaggag
gagtgcgcggctcctccgcctcccctggctggtcgactcttactggaagacggtaaagaa
gcctccccacactcaggccctaagaacggggagatccccgctctgtgtgacaccccctcc
ggcttgactgtcctcaagcagcttctccagaagaggcagcagggacagacgcttccccga
caagtggtcggtgcacacagccactccactgctgtggctcaggccgcagcgctgctagat
cctacagctaaaccagccaaatccagaaaagctccctccacctctcagcgtaaacccagg
gcgccgaaacctgccacccccaagagtaaaaagccccgaatcaggaaaggcaagacgagc
ggcactcagccagatccgacagtgaagcaggagggcaacgtgtcggacgactgccccctc
tttctgtcagacccgggcctggacgcttgtaacttcatagaggacagcttgtccccggag
ctcccgcacaactacacgttcgatatcaacgctattgatcagacggagttctccagcccg
tacagcggcagccagtttgtcctgactgataaaaatttaccggtcaagttcctgagtgac
gtgagccaggaggccgtgtgcgctcagagcctgggcttcgagaagaaactggacaggctg
tttgtctgtggggaggagcttcaaaggggctcagactggcacaaagcgaggccggcgagc
cccgacctcttcgacagacccgagaacaaggagtccgcgacgaatcacctcacgttcctc
gactctgagcgaatcaagagcagagagtgggacctctctttatgtaaagcccacagcctc
agcccctttcaagactttcactgtgagagaaaagagctgctgttttccgtcttcgagccc
gtcctgccgctgcctttaagctccgcctccttcgtcgaccacgagggctcaccgacgggg
gatctcctggagggcatggatggactgacgtccaccacgcccagtagctccccccgctcc
gtcggctcgctatcccaggtgagggcgagccagctgctgcgggggacgggaggcggagcc
cacgtcctcaagcccctcatgtcccctccgagtcgggaggagatcctcaacactctgctg
gacctggagatgtcggaggcgaccttccaagagcccttctgcagcgacccctccgacgcc
ccggggaaaccaatggaggttggcggccgtaagctaacggtgggcaccagactgacgaag
gagctagcagagttcagcggagagctctctttggagggcctctgcttctggaagacggct
ttctccgccatgacgcaccccgccgccaatattacctcatgttcccaagcgcagggagcc
tcggaggcgagcaaagagccggcccgacgcgacccgtcctcagccggcgacaagaaggtc
attcttctgccctgcaaaaacccaccgagccgagagcgcgtcagtctgtggctggaggcc
aggaaacagtacgagtgtctgcagaagtggaggagagacacggggctgctgaagaacaac
gggagggctgggttggattttgaggaggagaacccggagagaagcgcgcagccatcggtg
aaggtggagctgtgcgggaacctctccggtgtcaggcctcagaggaggaagaagcggagt
ctgtccttaatcatatctcctctgaagaacacaggctctcacagtaaatcctcacaggtg
agtccagtctcagatgaaggagctgtggatcttgagcaggaggaacaaggcaaaggtgat
gatggtgatgatgatgatgatgatgataaaaccacctctccagagtcccccgagctgcct
ccgtggcagcagtcctgtcagcccagcccctcaggcccagaccagctcggctcaaacagg
cagagtgaaatctctccagaaccgccgtcacctcggctctctaactccctggagcggctc
ggagagaaccgcagtccctcgcgcctccgtgtcagcagtaacagggaagatggcaggagt
agtccccatctccttcacagcacccccttctcgaggaggaggcggaggagcaaggaagac
gtggagcccgtgtgcagcacgcccatctccgaggagagtcacggctctcagagacttcac
tggaggaggacgagtcaggcggacccgctgaggagagtgttactgaccacacagataaag
aaccagtttgctgctctgaacgtgccaaagaaagaaaactctcagatcgaagggcccagc
atagccaactcttacggcttcaaagtcagcatgcagaacttacaggaagccaaagctctg
catgaggtccagtacctaaccctgatgggcatggagctccatgcaagaactcgccgtgac
ctggagcctgaccccgagttcgaccccatatgtgccttattctactgcctcagctctgac
gcccccttgcctgatgtagacggcacacagctgaccggtgccattgtggtggacaaagac
tatcaaagcggagacgaaggtgacagaggaacagcgcccctgctggtcaggtcgggcgtc
tctgggctgcaggtgaaatgtgccactgatgagaagatgctgttccaggagctgatcagc
atcatgaggaggttcgacccagacatcctgttaggatacgaggtgcagatgcgatcctgg
ggctacctgctgcagcgcgccgccgtgctcggagtggacctgtgtcagcagctgtcacga
gtgccaggtgactccagagagaaccgcttcggcgcagacacggacgagtacggagccgac
accatgacggagatccacgtcgtcggacgcgtcaccatcaatctgtggagggtgatgaag
actgaggtgactttgaacaactacagctttgagaacgtggcgttccacgtgctgcaccag
cgtttcccgctctacagtccccgcacgctgtccgactggtttgaccacagcacacactta
tacaggtggaagacggtcgaccactacgtgagccgagtgtgtggcaccatgcagcttctg
cagcagcacgacatcatcggcagaaccagcgagctggccagactgttcgggattcagttc
ttccacgttctgacccgaggatcacagtaccgcgtcgagtccatgatgctgcgtgtggcc
aagcctctgaactacatccccgtgacgcccagcgtccagcagcgagcccagcagagggcg
ccgcagtgcctcccgctggtcatggagcccgagtcacgcttctacagcaactcactggtc
gtactggacttccagtcgctctacccctccatcgtcatcgcgtacaactactgctactcc
acctgcctcggccacatggacagcctcggcacgcctgacgagtttaagttcggctgcacc
tccctgcgggttcctcccgagctcctctaccagctccgcaacgacatcaccgtgtcaccc
aacggcatcgccttcgtcaaggcctcagtgcgtaaaggagtcctgcccagcatgctggag
gaaatcctcagcaccaggatcatggtgaagcagtccatgaagacctacaagcaggacaaa
gccctcatgaagctgctggacgcccgacagctgggactcaagctcatcgccaacgtcacc
ttcggctacgctgcagccaactactccggacgcatgcccagcgtggaggtcggagacagc
atcgtccacaaagccagagagaccctggagagagccatcaagctggtcaatgacaccaag
aagtggggggcgcgcgtcgtgtacggcgacaccgacagcatgtttgttctgctgaaagga
gccaccaaagagcaggcgttcaagatcggcaacgagatcgctgaggcagtgactgcaacc
aaccccaaacctgtcaagctcaagtttgagaaggtgtacctgccctgcgtgctgcagaca
aagaagcgttacgtgggatacatgtatgaaagccttgaccaaaaggaacccgtgtttgac
gccaaagggatcgagacggtgcgccgcgacggctgccccgctgtttccaagatcctggag
cgttccattaagctgctgtttgagacgcgggacatcagccaggtgaagcagttcgtgcag
cgtcagtgtgtgaaggttctggacggtcgggccagcatgcaggacctgaccttcgctaag
gagtacagaggcagcggctcgtaccggcccggagcctgcgtccccgcactggagctcacc
aggcgtatgatggcgtacgaccggcgcctggagccacgcgtgggcgagcgggttccctac
gtggtcgtgtacgggctgcccggcgtccccctcatccagctggtgcgtcggcccatggag
gttctacaggaacccgccctccggctcaacgccacctactatgtcaccaagcagatcctg
ccgccgctggcccgcatgttccagctgatcggggtggacgtgttcagctggtaccaggag
ctcccccggatccagaaagcgtcctgctcctccgggggggaggaagtgggcaggaaggga
accatctcccagtacttcaccacgctccactgccccgtgtgcgacgagctgacccagctg
ggcgtgtgctcgcggtgtcgcgccgaacctcagagagtcgccgtcacactctaccaggac
atgagacagtgggagagtcagcaggaccagctgctgaagatctgcaggaactgcagtggc
tgtgccgagcggcaggttccctgtgtgtccctggactgtcccgtcctctacaagctggcc
cgggtcaacagacagctctgcaaggccccctacctccgacagctgctggagcagttctga
DBGET
integrated database retrieval system
