Seriola dumerili (greater amberjack): 111237844
Help
Entry
111237844 CDS
T05606
Symbol
trpc1
Name
(RefSeq) short transient receptor potential channel 1
KO
K04964
transient receptor potential cation channel subfamily C member 1
Organism
sdu
Seriola dumerili (greater amberjack)
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sdu04040
]
111237844 (trpc1)
Ion channels [BR:
sdu04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
111237844 (trpc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
Ank_4
MTR4-like_stalk
LHD_TRPY1
TALPID3
Motif
Other DBs
NCBI-GeneID:
111237844
NCBI-ProteinID:
XP_022622841
LinkDB
All DBs
Position
Unknown
AA seq
794 aa
AA seq
DB search
MHISVWPYSLSVVMAALYQGTDASSPDKFLALKDVREVKEETTLDEKLFLLACEKGDYYM
VKKLLEENRHGELNINCVDVLGRDAVTITIENENLDILQLLLEHGCQGTDALLVAIDSEV
VGAVDILLNHRPRRSSKPSIAKLMQRIQNPEYSTTMDVAPVILAAHRNNYEILTMLLKQD
ISLPRPHAVGCECTLCNAKNKKDSLRHSRFRLDIYRCLASPSLIMLTEEDPILRAFELSA
DLKELSLVEVEFRNDYEELAKQCKMFAKDLLAQARNSRELEVILNHTSSEDHIDKRGLLE
ERMNLSRLKLAIKYNQKEFVAQSNCQQFLNTVWFGETASYRRKHTCLKMATVLSVAMLWP
LLSVCYLLVPRSRVGQIIHTPFVKFIIHSASYFTFLLLLNLYSLVEGKKNTMGPALEMID
FLLILWIIGMVWSDVKRLWYEGLEDFLEESRNQLSFVMNSLYLATFALKIVAHSKFKNVE
ETERKNWDAFHPILVAEGLFAFANVLSYLRLFFMYTTSSILGPLQISMGQMLQEFGKFLG
LFLLVLFSFTIGLTQLYGKDHKDPDKNPPKDCEGIFCQQQSNDAFYTFMGTCYALFWYIF
SLAHVALFVTRISYTEELRSFVGAMIIGTYNIVVVIVLTKLLVAMLHKSFRQIANHEDKE
WKFARAKLWLSYFDDKCTLPPPFNILPSPKTVCYLVTSMSKWICSHTSKGKVKRQNSLKE
WKNLKQKRDENYQKIMCCLVHRYLTSTRQKMQSTDQATVENLNDLRQDLSKFRNEMRDLL
GFRTSKYAMFYPRS
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atgcacatcagtgtttggccgtactcgctctccgtcgtaatggcagctctgtaccagggc
acggacgcttcctctccggataaatttctggccttgaaagacgtgagagaggtgaaggag
gaaacgacgctggatgagaagcttttcttgctggcatgcgagaaaggcgactactacatg
gtgaagaagctcctcgaggagaaccgacacggcgagctcaatatcaactgcgtagacgtg
ctgggccgagacgccgtgaccatcaccattgaaaacgagaacctagacatcctgcagctt
cttctggaacatggctgccaggggacagatgccttgctcgtggccatagactcagaggtg
gtgggagctgttgacatcctcctcaaccacaggcccaggcgatcttccaagccctccatt
gctaaactgatgcagcggattcagaacccagagtattccaccaccatggatgtggctcca
gtcatcctggcagcccacaggaacaactacgagatcctgactatgctgctgaaacaggac
atctcgcttccccggccccacgccgtaggctgcgagtgcacgctctgcaatgctaaaaac
aagaaagacagcttacgacactccagattccgcctggacatctaccggtgcctggccagc
ccctctctgatcatgttgactgaggaagatcccatactcagggcctttgagctgagtgca
gacctcaaggagctcagtctggtcgaggtggagttcaggaatgactatgaggagctggcg
aagcagtgtaagatgtttgccaaggacctgctggctcaggctcgaaactctcgagagcta
gaagttattctcaatcacacgtccagcgaagatcacattgacaagagaggcttgctcgag
gagcgcatgaacctcagccgacttaaactcgccatcaagtacaaccaaaaagagtttgtg
gctcagtccaactgtcagcagttcctcaacaccgtgtggttcggggagacggccagctac
cggcgcaaacacacctgtctgaagatggccacagtgctgagcgtagccatgctctggccg
ctgctttctgtctgctaccttctggtgccgcgttcccgtgttggccagatcatccacacg
cccttcgtcaagttcatcatccacagcgcctcctactttacattcctgctgctgctgaac
ctctactctctggtcgaaggcaagaaaaacaccatgggccctgcattagagatgattgat
ttcctgctcatcctctggatcatagggatggtctggtcggatgtgaagcgtctgtggtat
gaagggctggaagactttctggaagagtcaaggaaccagctgagcttcgtgatgaattcc
ctttacctagccacctttgccctcaagattgtcgctcatagcaagttcaagaatgtggag
gaaacagagaggaagaactgggatgccttccatcccatcctggtggctgaaggcctgttt
gcctttgccaatgttctcagttacctgcgactcttctttatgtacacaaccagctccata
ctgggacctttgcagatctccatgggtcagatgctgcaggagtttggaaagtttttgggc
ctcttcctgctggtgttattctctttcaccattggactcacccagctttatggaaaagac
cataaagacccagacaagaatccacccaaggactgcgagggcatcttctgccagcaacag
agcaatgatgcattctacacgtttatggggacctgctacgctctgttctggtacatattc
tcccttgcacatgttgcgctcttcgtcacccgcatcagctacacagaggagctgcgctct
tttgtgggtgccatgatcataggcacctacaacattgtcgtggttattgtcctgaccaag
ctgctggtggcaatgctccataaaagcttcagacaaattgctaatcacgaggataaggag
tggaagtttgctcgggccaagctgtggcttagctactttgatgacaagtgtaccctgcca
ccaccgttcaacatcctcccctccccaaagactgtgtgctacttggtgaccagcatgagc
aagtggatctgttcacatacatcgaagggcaaggtgaagagacagaacagtttgaaggag
tggaagaacctgaagcagaagcgtgatgagaactaccaaaagatcatgtgttgtctggtt
caccgctacttgacctccacgcgccaaaagatgcaaagcacagatcaggccacggtggaa
aatctgaacgacctacgccaagacctctccaagtttcgcaacgagatgagggatttgctg
ggcttccggacgtccaaatatgccatgttctacccgaggagctaa
DBGET
integrated database retrieval system
