Seriola dumerili (greater amberjack): 111237883
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Entry
111237883 CDS
T05606
Name
(RefSeq) transcription factor Sox-17-alpha-like
KO
K04495
transcription factor SOX17 (SOX group F)
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
111237883
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sdu03000
]
111237883
Transcription factors [BR:
sdu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
111237883
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
Sox17_18_mid
HMG_box_2
HMG_WDHD1
HTH_24
Motif
Other DBs
NCBI-GeneID:
111237883
NCBI-ProteinID:
XP_022622903
UniProt:
A0A3B4U1E4
LinkDB
All DBs
Position
Unknown
AA seq
400 aa
AA seq
DB search
MSSPDAGYASDDQIQARCAMSVMMPGMGHCQWADPLSPLGDTKVKSEPCASGSGSQSRGK
SEPRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALPVTEKQPFVEEAER
LRVQHMQDHPNYKYRPRRRKQVKRIKRLDSGFLVHGVSDHQAQSMSGEGRMCVESLGLGY
HEHGFQLPPQPLSHYRDAQALGGPSYETYSLPTPDTSPLDAVESDSMFFPPHSQEDCHMI
PAYAYHSQAAEYQPQDPLSNHHGNSILHRHAASAPEQPPQPTNLPPSYMGCPNPLAMYYT
QHCSPSHTKRHPGGAGQLSPPPDSHPHSADSVEQMHHSELLAEVDRSEFEQYLSSSSARA
DMTGLPYGPHEAGMQGPESLISSVLSDASTAVYYCSYNNS
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtcccgatgcgggttacgccagcgacgatcagatccaggcaaggtgtgcgatg
tcagtcatgatgcctggaatgggacactgccagtgggccgaccctctcagtcctctcggg
gacaccaaagtgaaaagcgagccgtgcgcgtccggctccggcagccagagtcgcgggaag
agcgaaccgcggatccgacggcccatgaacgcgttcatggtctgggcgaaggatgagcgc
aagaggctggcgcagcaaaaccccgacctgcataacgccgagctgagcaaaatgctgggg
aaatcgtggaaagcccttcctgtcacagaaaagcaaccctttgtggaggaggccgagcgg
ctgcgggttcagcacatgcaggatcaccccaactacaagtacaggccccggcggcggaag
caggtgaagaggattaagaggctggactctggctttctggttcacggcgtgtccgatcac
caggcccagtccatgtcgggagagggcagaatgtgtgtggagagcctgggcctgggctac
cacgagcacggcttccagcttcctccacagccgctcagtcactacagggatgctcaggct
cttgggggcccctcttatgaaacctacagcctccccacacctgacacctctcctctggac
gctgtagagtcagactccatgttcttccctccacactcacaagaggactgccacatgata
cctgcatacgcttaccactcccaggcagcagagtaccagccccaggaccctctctccaac
caccacggcaactccatcctgcaccgacacgccgcctcagctccagagcagccccctcag
cctaccaacctgcccccttcctacatgggatgccccaatcctctggccatgtattacact
cagcactgcagtcccagccacactaaacggcatcccggaggggcaggacagctctcccca
cctcctgactctcaccctcactctgcagacagcgtggagcagatgcaccactctgagctg
ctggccgaggtggaccgcagcgagttcgagcagtatttgagttcctcttcagcgcgtgcg
gacatgacgggcttgccctacgggccacacgaggctggcatgcaaggacctgaaagcctc
atatcatcggtgctgtcagacgccagcacagctgtgtattactgtagctacaacaactcc
taa
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