Seriola dumerili (greater amberjack): 111238002
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Entry
111238002 CDS
T05606
Symbol
supt5h
Name
(RefSeq) transcription elongation factor SPT5 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
111238002 (supt5h)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdu03021
]
111238002 (supt5h)
03019 Messenger RNA biogenesis [BR:
sdu03019
]
111238002 (supt5h)
Transcription machinery [BR:
sdu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
111238002 (supt5h)
RNA polymerase I system
111238002 (supt5h)
Messenger RNA biogenesis [BR:
sdu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
111238002 (supt5h)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW2_Spt5
KOW5_SPT5
KOW7_SPT5
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
Spt5_N
KOW1_SPT5
GPKOW_C
DUF150_C
DUF3912
Ribonuc_P_40
DUF6406
Motif
Other DBs
NCBI-GeneID:
111238002
NCBI-ProteinID:
XP_022623077
LinkDB
All DBs
Position
Unknown
AA seq
1084 aa
AA seq
DB search
MSDSEDSDFSDNQSERSSDGEAEEVEENEEEANSPVGSDKVAEEEGEDLEDEEEYDEEEE
EDDDDRPRKKPRHGGFILDEADVDDEYEDEEDQWEEGAEDILEKVNEEAEVSNMDHVVLD
EDHSGSRRLQNLWRDSREEALGEYYMRKYAKSSAGEHYSGGSEELSDDITQQQLLPGVKD
PNLWTVKCKIGEERATAIALMRKFIAYQFTDTPLQIKSVVAPDHVKGYIYVESYKQTHVK
AAIEGIGNLRMGFWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGLYKDDIAQVDYV
EPSQNTISLKMIPRIDLDRIKAKMSLKDWFAKRKKFKRPAQRLFDAEKIRSLGGEVSHDG
DFMIFEGNRYSRKGFLFKSFAMSAVITDGVKPTLSELEKFEDQPEGIDLEVVTESGKERE
HNLQAGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDPLEFPAHELRKYFRMGDH
VKVIAGRYEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDAGGQHEWG
ELVQLDPQTVGVIVRLERETFQVLNMHGKVLTVRHQAVNRRKDNRFAVALDSEQNNIHVK
DIVKVIDGPHSGREGEIRHLFRGFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNF
TVGGFAPMSPRISSPMHHGGGGAQQRGGGGGGGMGRGRGRRDNELIGQTVRISQGPYKGY
IGVVKDATESTARVELHSTCQTISVDRQRLTTMGAKRHGGMTSTHGRTPMYGPQTPMYGT
GSRTPMYGSQTPLHDGSRTPHYGSQTPLHDGSRTPGQSGAWDPNNPNTPSRNEEEYDFGY
DDEPSPSPQGYGGTPNPQTPGYPEVPSPQVNPQYNPQTPGTPAMYNTEQYSPYAAPSPQG
SYQPSPSPQSYHQVAPSPVGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSP
GGYNPHTPGSNIEQGSSDWVTTDILVRVKDSFMDLMGQTGVIRSITGGMCSVFMQESEKV
VSISSDHLEPVTPTKNNKVKVILGEDREATGILLSIDGDDGIVRMELDDQLKILNLRFLG
RLEH
NT seq
3255 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacagcgaggacagcgacttctccgacaaccagagtgagcgcagcagtgatgga
gaggccgaggaagtggaagagaatgaggaggaggcgaacagccccgtgggcagcgacaag
gtagccgaagaggaaggggaggacctggaggatgaggaggagtatgatgaagaggaggag
gaagacgatgatgaccgtcccaggaagaagccaagacatggagggttcatcctggatgaa
gccgatgtggatgacgagtatgaagatgaggaggatcagtgggaggaaggagctgaagat
attttggagaaagttaacgaggaggctgaagtgtctaacatggaccacgtggttctggat
gaggatcactctggatccagaaggctgcaaaacctctggagagactccagagaggaggcg
ctgggtgaatactacatgaggaagtatgccaagtcctcagcaggggagcattactcagga
gggtcagaggagctctctgatgacatcacccagcagcagctacttcctggagtcaaggat
cccaatctgtggacagttaagtgcaagattggagaggagagggcaacagccattgcgttg
atgaggaagttcattgcctaccagttcaccgacacacctctgcaaatcaagtctgtggtc
gccccggatcacgttaaaggctacatctatgtggagtcatacaagcagacacatgtgaag
gcggccatagagggcatcggcaacctgaggatgggcttctggaaccagcagatggttccg
atcaaagagatgacggacgtcctcaaagtcgtcaaagaggtcacgaacctgaagcccaag
tcctgggtcagactgaagagaggcctatacaaagacgacatcgctcaggtcgactatgtg
gagccaagtcagaatactatctccctgaagatgatcccccgaatagacctggaccgtatc
aaggccaagatgagtctgaaagactggtttgctaagaggaagaagttcaagagacctgct
cagaggctgtttgatgctgaaaagatcaggtccctgggcggggaagtcagccatgatgga
gacttcatgatctttgaggggaaccgttacagccgcaaaggattccttttcaagagtttt
gccatgtctgctgtgatcacagatggagtgaagcccactctgtcagagctggagaagttt
gaagaccagcctgaaggaatcgacttggaggtggtcacagagtcaggtaaggagcgtgaa
cacaacctgcaggccggtgacaatgtggaagtgtgtgagggagagttgatcaacctgcag
ggaaaaatcctgagtgtggatggcaacaagatcaccatcatgcccaaacatgaagacttg
aaggaccccctggagttcccggcccatgagttaagaaaatatttccgaatgggcgaccac
gtgaaggtgatcgctgggcgttacgaaggagacaccggcctcatcgtcagagtggaggag
aattttgtcattctcttctctgacctcaccatgcacgagttgaaggttttgcccagagac
ctgcagctgtgctcggagactgcgtctggcgttgatgcaggagggcagcatgagtggggg
gagctggttcagctggacccacagaccgtcggggtcattgtccgactggagagagagacc
ttccaggtgctgaacatgcatggaaaggtgctgacagtgcgtcaccaggcagtgaaccgc
aggaaggacaaccgctttgccgtggcattggactctgagcagaacaacatccatgtcaag
gacatcgtgaaggtcattgacgggccacactctggccgcgaaggtgagatccgacacctc
ttcagaggcttcgccttcctccactgcaagaagctggtggagaatggaggcatgttcgtc
tgcaagaccagacacctggtgttagccggtggatccaagcccagagacgtcaccaacttc
actgtgggaggatttgctccaatgagccctcgcatcagtagccccatgcaccacggtgga
ggaggtgctcagcagagaggaggaggaggtggaggaggaatggggcggggccgaggacga
agggacaatgagctgattggtcagacagtccgcatctcccagggtccatacaaagggtac
attggtgtggtgaaggatgcaacagagtctacagccagagtggagctgcactccacctgt
cagaccatctctgtggacagacagcgattgactaccatgggagcaaagagacacggtgga
atgacctccacccacggacgtactccgatgtacggcccccagactcccatgtacggaacc
ggctccagaacgcccatgtatggttctcagacaccacttcatgatggaagccgtacgcct
cattatggctctcagaccccactgcatgatgggagcaggacgccgggtcagagtggagcc
tgggaccccaacaaccccaacacaccatctagaaatgaggaagagtatgactttggctac
gatgatgagccctccccgtcccctcagggatatgggggaacccccaacccccagaccccg
ggttatccagaagttccctctccacaggtcaaccctcagtacaaccctcagacacctggc
acgcctgctatgtataacacagagcagtattctccctatgcagccccatcccctcagggc
tcctatcagcccagtccaagtcctcagagctaccaccaggtggcgccctcaccagtcggc
taccagaacacgcactctccagccagctaccatccaacgccctcccccatggcgtaccag
gccagtcctagcccgagtcctgtgggatacagtcccatgacgcccggagcaccctctcct
ggaggctacaaccctcacaccccgggctccaacattgagcagggcagcagcgactgggtg
accaccgacatcttggtccgagtgaaggactccttcatggacctgatgggacagaccggg
gtcatcaggagcatcacgggagggatgtgttcagtgttcatgcaggagtcagagaaggtg
gtcagtatcagcagtgatcacctggagcccgtcactcccaccaagaacaacaaggtaaag
gtgattctgggagaggaccgtgaggcaacagggatccttttgagcatcgacggagatgac
ggcatcgttcgcatggagctggatgaccagctgaagatcctcaacctgaggtttctggga
cgcctcgagcactga
DBGET
integrated database retrieval system
