Seriola dumerili (greater amberjack): 111238336
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Entry
111238336 CDS
T05606
Symbol
pcdh20
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
111238336 (pcdh20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sdu01009
]
111238336 (pcdh20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sdu04515
]
111238336 (pcdh20)
Protein phosphatases and associated proteins [BR:
sdu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
111238336 (pcdh20)
Cell adhesion molecules [BR:
sdu04515
]
Cadherins
Protocadherins
111238336 (pcdh20)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
DUF6899
Adeno_E3_CR2
Motif
Other DBs
NCBI-GeneID:
111238336
NCBI-ProteinID:
XP_022623510
LinkDB
All DBs
Position
Unknown
AA seq
1054 aa
AA seq
DB search
MFGVPRDCTTLHFAGHGQTREMVNQVVYLFIFALLMPDRVVYTRDRLFALRRMASTPAEW
PSVPEELRRRHRSGCREEEEILMEVSIFHKHIVGTIIGRSSNSLPKSSLFLPHQSCTIRR
LLEKQLFVKAEKCGFHTVSFVGFVIIPATCVVEAVTWGIEQQDINMFNSRHPSLSKRGGI
WGLCILLLYTSPLSCFANFSQAKELIYKIKEGLPRGTFIGAIGVDLNLDFTVEPPFLFSL
SQKKVSEQYVNLNNTTGELHTSATEIDRETLCPDNAEGQGCVLSLDVFVLPQQYFQLIKV
KILIEDVNDNRPKFPVDEICMSVPENTPVNARYAVEQSAVDPDLGVHGVQTYWLVNDFGV
FTLDVEENEGGELTPFLIVTEALDRETQAEYITDIIAEDGGTPPLLGAATLKIVITDVND
NCPQFTESQINVTLHGNATKGAHLARLHAFDPDLGANAQISYAYSERVPRDTRSLFHLDR
ITGVIKLAGKINTVTATFYKLTALANGPGCIPAVATVTFHIIKVVTGPPAVIPRYIAPEK
DGVVTIKESEPAFSPIAFFTVKNIDMNQRVDCYLEGTGPFRLGPYQLFKNEYLLETTEPL
DYEKIQEYELIVVAKNTQGLVIKTFLKVQVLDENDNAPVFQQSLLEISVEENNPPNTFLT
QLQASDQDSESRGEVIYLLGGDAPGIFVVDRVTGVLTVATSLDREEKETYRFIVRAVDQG
TPRRESIATVVVSVQDRNDNSPRFINKDFTFFVPENFPGYGEIGVLSVTDADAGENGWVA
LSILNGSDIFMIDTGRGALRAKTSLDREQQGTYQLWIEAIDGGEPTLSCVTMVTVLLLDV
NDNPPIVLFPQSNQSYMLVLPNTLPGTSITEVYAVDKDTGMNAVIAYSIIKRKGGEPGSF
AIDPETGNITLKRELSNRGLYSLLVKVSDHGQPEPLYSTVMVNFFVNETVSNESYIQSLL
TREADIEIEERPWYTGQMTEGPERYELFPCQPVLIALSVTCLGLFFLVVTLTSYICCKRF
KKHRKKRSEVEIPLKMKDDSMQVVNRKLRQISNI
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atgtttggcgtccctcgtgactgcaccacgctgcacttcgccggccacggacagaccagg
gagatggttaaccaagtggtgtatctcttcatctttgctctcttgatgcctgatcgcgtt
gtctacacccgcgaccgcctttttgccctgcggagaatggcctccacacccgcagagtgg
ccttctgttcccgaggaactgagaaggaggcatcgcagtggatgcagagaggaagaggag
atcctcatggaggtttctattttccacaagcacatcgtagggaccatcatcggccgatcg
agcaactcactgcccaaatccagcctcttcctgccccatcagtcctgcaccatcagaagg
ctactagagaagcaactctttgtaaaagctgagaagtgtgggtttcacactgtgtccttt
gtggggtttgtcatcatccctgcaacctgcgtcgtggaagcagtcacctggggaatcgag
cagcaggacataaacatgttcaacagcagacaccccagccttagcaaaagaggaggaata
tggggattgtgcatcctcttgctttacaccagccctctttcctgttttgcaaatttcagc
caagcaaaagagctcatctataagataaaggagggattacccagggggaccttcataggg
gccattggagtagacttaaatttggatttcactgttgagcccccctttttattcagtctc
tcgcaaaagaaggtcagtgaacagtatgtgaacctaaataatacgacgggggagcttcac
acatctgctacagagattgacagagagaccctctgtcctgataacgcagagggacaggga
tgtgtcctctcactggatgtgtttgtgttgcctcagcagtactttcagctcataaaagtt
aagattttaattgaggatgtgaacgacaacaggccaaagttccccgtggatgagatctgt
atgtctgtccccgaaaacactcccgtcaacgctcgttatgcagtggagcagtctgcagtt
gacccggacctgggtgttcacggagtgcagacctactggctggttaacgactttggcgtg
ttcacactggatgttgaggagaatgagggaggagagctcacacccttcctcattgtgaca
gaggccttggacagagagacacaggctgaatacattacagatatcattgcagaggatgga
gggacccctcctctactcggcgcagctactttaaaaattgtcatcacagatgtgaacgat
aactgcccccaattcacagagtcacaaattaatgtcactctgcatgggaatgctaccaaa
ggggcacatttggcacgtttgcatgcttttgaccctgaccttggtgctaatgctcagatc
agctacgcttacagtgaacgtgtgccaagggacaccaggagcttgttccatttggacaga
atcactggggtgatcaagctagcagggaaaataaacactgtcacagccacattttacaaa
ctcaccgctctggctaacgggcctggttgtatccctgctgttgccactgttactttccat
atcatcaaagttgtcactggaccccctgctgtcatacctcggtacattgcaccagaaaag
gatggggtagtcactataaaggagtctgagccagccttttctccaattgctttttttact
gttaaaaacattgatatgaaccaaagggtggactgttatttggaagggactggtcccttc
aggcttggtccctatcagctgttcaagaatgaatacctgctggagactacagagcccttg
gactatgaaaagatacaggaatatgagctaattgtggttgctaagaatactcaaggactt
gtcatcaagacattcctcaaggtgcaggtgttggatgagaatgataacgcaccagtgttt
cagcagtctctgttggaaatatctgttgaggaaaacaatccaccgaacacttttctaacc
cagctccaagcctcggaccaggacagcgaaagccgaggggaagtcatctacctccttgga
ggtgacgcccccgggatctttgttgtggatcgtgtgacaggtgtcctgactgtggccaca
tcactggaccgtgaggagaaagagacataccggttcatagtgagagcagtggatcagggg
acacccaggagggagtcaattgcaactgtggtggtgagcgtgcaagaccgcaatgacaac
agtccccgcttcatcaataaagactttactttcttcgtgccagagaacttcccagggtac
ggtgagatcggtgttctctctgtgacggatgctgatgctggggaaaatggctgggtggcc
ctttccatcctcaacggcagcgacatcttcatgatcgacacagggcggggggcgctgagg
gccaagacatcactggaccgtgagcaacaagggacataccagctgtggattgaggccatc
gatggtggggagcccacgctttcctgtgttaccatggtgaccgtgctgttgttggatgta
aatgacaacccgcctattgtcctcttccctcagtccaatcagtcctacatgctagtgcta
cccaatacgttaccaggaacatcaatcacagaggtgtacgctgtggataaagatacaggc
atgaatgctgtgatcgcctatagtatcattaagaggaaaggtggcgaaccggggtcattt
gccatagacccagaaacaggaaatatcacattaaagagggaactcagcaaccggggcctc
tacagccttctggtgaaggtcagtgatcatggtcagcctgagccactttactcaactgtc
atggttaacttctttgtcaatgaaacagtgagcaatgagagttacatccagagcctgctg
accagagaggctgacatagagatagaggagaggccctggtacactggccaaatgacagag
gggccggagaggtatgagctcttcccctgtcagcctgtcctcattgctctttcagtgaca
tgtctggggctttttttcttggttgttacactgacatcttacatatgctgtaagaggttt
aaaaagcacagaaagaaaagatcagaagtggaaatacctttaaaaatgaaggatgactca
atgcaggttgtgaaccgaaagctcaggcagatctcaaacatctaa
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