Seriola dumerili (greater amberjack): 111239869
Help
Entry
111239869 CDS
T05606
Symbol
skiv2l2
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111239869 (skiv2l2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdu03019
]
111239869 (skiv2l2)
03041 Spliceosome [BR:
sdu03041
]
111239869 (skiv2l2)
03009 Ribosome biogenesis [BR:
sdu03009
]
111239869 (skiv2l2)
03016 Transfer RNA biogenesis [BR:
sdu03016
]
111239869 (skiv2l2)
Enzymes [BR:
sdu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111239869 (skiv2l2)
Messenger RNA biogenesis [BR:
sdu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
111239869 (skiv2l2)
Spliceosome [BR:
sdu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
111239869 (skiv2l2)
Complex C
U4/U6.U5 tri-SnRNP related factors
111239869 (skiv2l2)
Ribosome biogenesis [BR:
sdu03009
]
Eukaryotic type
Pre-60S particles
Helicases
111239869 (skiv2l2)
Transfer RNA biogenesis [BR:
sdu03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
111239869 (skiv2l2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
111239869
NCBI-ProteinID:
XP_022625511
UniProt:
A0A3B4VR38
LinkDB
All DBs
Position
Unknown
AA seq
1037 aa
AA seq
DB search
MADAFGDGLFSVFDDEQQTTTSKKIPTPVAPGTGKAVGKDGTDKDAAPSARVKREADSDG
GEEIVFAKKPRQETVSANDLNLAEFMPQVKVEQVETVEGCSHEVALPASDEYKPLKPRVG
KAAKEYPFVLDPFQREAILCIDNNESVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSP
IKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVI
FDEIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVVYTD
YRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDSGSSSGGGKWDPRGR
KGGTKGPSSVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNRDDEKRLVEEVF
NNAVDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATET
FAMGINMPARTVLFTSARKFDGKNHRFITSGEYIQMSGRAGRRGMDDRGIVIFMVDEKMS
PAVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVVEK
IKKLEEQYHAIEIPNEESVATYFKIRQQLAKLGKEIQEFIHKPKYCLPFLQPGRLVKVKN
ENADFGWGVVVNFCKKSNVKTSTDLEPLYVVEVLVHCSKDSVKDAATEAAKPAAPGETGE
MQVVPVMLHLLTSISSVRLYIPKDLRPFDNRQLMLKSIQEVQKRFPDGVPLLDPIDDMGI
KDPALKKVIQKVEAFEHRMYSHSLHSDPNLESVYSLCEKKALIAADVRTAKRELKKAQTV
LQMDKLKCRKRVLRRLGFASPSDVIEMKGRVACEISSADELLLTEMVFNGLFNDLTVEQA
TALLSCFVFQENASEMPKLTEQLAAPLRQMQECAKRIAKVSADAKLEVDEETYLNQFKPH
LMDVVYAWANGATFAQICKMTDVFEGSIIRCMRRLEEVLRQMCSAAKAIGNTELENKFAE
GITKIKRDIVFAASLYL
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgcgtttggagacggcttgttcagcgtgtttgatgatgaacaacaaacgacc
acgagcaaaaagatacctacccctgtggctccgggaacagggaaagctgtaggtaaagat
ggcactgacaaggatgctgctccatctgcacgggtcaagagggaggcagacagtgacggc
ggagaggagattgtgtttgcgaagaaacctcgacaggagacggtctctgctaatgacctc
aatcttgcagaatttatgccccaagtgaaggtggagcaagttgaaactgtggaaggatgc
tcacatgaggtcgctctgcctgccagtgatgaatataaaccactgaaacctcgagtgggg
aaagcagccaaggagtacccttttgttcttgacccgttccagcgtgaggccattttatgt
attgacaacaatgagtctgtgcttgtttctgcacacacctctgctggcaagactgtctgt
gctgagtatgccattgctctggccctccgagagaagcagagagtgatcttcaccagcccc
atcaaggctctttccaaccagaaatacagagagatgtatgaagagtttcaggacgttgga
ctgatgactggtgacgtcaccatcaaccccaccgcctcttgcctcgtcatgacaactgag
atcctgaggagcatgctgtaccgaggctcggagatcatgagggaagtggcgtgggtcatc
tttgatgagatccattacatgagagatgcagagcgtggtgtggtgtgggaggagaccatc
attcttcttcctgacaacgtgcattatgtcttcctgtcagccaccatccccaatgccaga
cagtttgctgagtggatttgtcacctacataagcagccgtgccatgtggtgtacacagac
taccgtcccactccgctgcagcactacatctttccagcagggggcgacggtctccacctg
gtggttgatgagaatggagacttcagagaagacaatttcaacacagctatgcaggtgctg
agagatgcaggggattctgggagcagcagcggaggtggcaagtgggacccgagaggacga
aaaggaggcactaaaggtccgtccagtgtgttcaaaatagtaaagatgataatggagaga
aacttccagcctgtcatcattttcagcttcagcaagaaagaatgtgaggcctacgctctg
caagtggccaaactggactttaatagagatgatgagaaacgtctcgtggaggaagtgttc
aacaacgcagtggactgtctgtcagacgaagacaagaaactccctcaggtggaacacgtg
ctgccactgttgaagaggggaataggaatccatcacggaggcctgctgcccatcctgaaa
gagaccatagagatccttttctctgaaggccttctcaaggccctctttgcaacagagaca
ttcgccatgggcatcaacatgccggctcgcactgttctcttcaccagtgcacgcaagttt
gatggcaagaatcatcgctttattacatcaggtgagtacatccagatgtctgggcgtgct
ggaaggagaggaatggacgacaggggaattgttattttcatggtggatgagaagatgagt
ccagctgtgggcaaacagctactcaagggatcagcagaccctttgaacagtgccttccac
ctgacctacaacatggtgctcaacctgctgcgtgtggaggagatcaacccagagtacatg
ttagagaagtctttctaccagttccaacactacagggctttgcctggtgtagtggagaaa
ataaagaagctggaggagcagtaccacgccattgagatacctaatgaagagagtgttgcc
acgtactttaaaatcagacagcagctggccaaactgggtaaagagatacaagagttcatc
cacaaacccaaatactgcctacccttcttgcagcctgggcgacttgtcaaggtgaaaaat
gaaaatgctgactttggctggggagttgttgtaaacttttgcaagaagtccaatgtgaag
accagtacagacttggagccgctgtatgtggtggaggttttggttcactgtagtaaagac
agtgtaaaagacgctgcgacagaggctgctaaacctgctgctccaggggagactggagag
atgcaggtggtcccagtgatgctgcatctcctgacttccatcagctcagttcgtctttac
atccccaaagacctcaggccctttgacaacagacagctcatgctcaagtctatacaggag
gtgcagaagcgtttcccagatggcgttcctctgctcgaccccatagacgacatgggcatt
aaagaccctgcactgaagaaagtcattcagaaagtggaggcttttgagcaccgcatgtac
tcccattccctgcacagtgaccccaacttggaatctgtatattctctctgtgagaagaaa
gctctgatcgcagcagatgttcgaacggcaaagcgagagctgaagaaagctcagaccgtc
ctgcagatggacaagctgaagtgcaggaaaagagttctgcgacgcctcggcttcgccagc
ccctccgacgtgatcgagatgaaagggcgagtcgcctgtgaaatcagcagtgctgatgag
ctcctgctcacagagatggtgttcaacggtctcttcaacgatctgacggtggaacaagcc
accgccctgctgtcctgcttcgtcttccaggagaacgccagtgagatgccgaaactcacc
gaacaactagctgcgcccctgagacaaatgcaggagtgtgcgaagcggatagcaaaggtg
tctgcagacgccaagctggaggtggacgaggagacctatctaaaccagtttaagccccac
ctgatggatgtggtctacgcctgggctaatggcgccacattcgctcagatctgcaagatg
acagacgtctttgaagggagcatcatccgctgcatgcgccgtctggaggaggtgctgagg
cagatgtgctctgcagccaaggccatcggcaacactgagctggaaaacaagtttgctgaa
ggtataacgaagatcaagagagacattgtttttgctgccagtctctacctatag
DBGET
integrated database retrieval system
