Seriola dumerili (greater amberjack): 111240455
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Entry
111240455 CDS
T05606
Symbol
taf1b
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit B
KO
K15213
TATA box-binding protein-associated factor RNA polymerase I subunit B
Organism
sdu
Seriola dumerili (greater amberjack)
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdu03021
]
111240455 (taf1b)
Transcription machinery [BR:
sdu03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
111240455 (taf1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rrn7_cyclin_C
Rrn7_cyclin_N
Zn_ribbon_RRN7
DUF5816
Motif
Other DBs
NCBI-GeneID:
111240455
NCBI-ProteinID:
XP_022626196
LinkDB
All DBs
Position
Unknown
AA seq
620 aa
AA seq
DB search
MKCKYTTNLEFVVQNGSLKVNMDDEHTAGFREPCAQCSAVDWGISDEGRFYCRSCHNVIE
RTREVVDLTFTPGSTRVSTIGRGSRNKRPEGGREWMVCEGFQFILRNQANALLRLGVSPH
FKDQVLCQLWRLFLQKSRQAYTSNPVRSSTFKVQNMDSDSESVAESSVVSASETDGETNL
PSTAGSNVDSSSNWSLGSGSVDGVAYVTARRKRGHCLMSMKKTLALILLALIWSREPLTL
SDLLRLVNEGHVPYVNAYEELPEEMRLDGRDAAIFRVERIPSHQVVHKEAQALVLYLQLQ
AFPPISRQSLLHPALLSLRYLTDANLPDELHPWVCSLMEHAGMADQTRHTFDPVSCPALP
RYDVQTAALIIVTMKLIFGMDDHSEWDLSSEASVHDDRENMFNLRRWYRLMQAALIKAQQ
RRHNDIARKQWKAKKPIYPKRKLKSVVMKRKRVAEQVQICFEKLSSCPVSVPRCDPSSFR
FCWGDEDGADGPSLHHKKLDRAVSLKNDILTPSNSTYWHPALRPCDSRKCVSHYSEVEAT
LPRSFVWLLQLFSFLLDVKPDYLYEEVLRVERRVFSSSMPLNQHLGKTGKTTTRTRKRTG
TGTRTGTTTSQRLQETKETR
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgaagtgtaaatacacaacaaatttagaatttgtggttcaaaacggttctttaaaagtg
aacatggacgacgaacacacggccgggttcagggagccctgtgctcaatgctctgcagtg
gattggggaatatcagatgagggtcgtttctactgcagatcctgccacaatgtcattgag
agaaccagggaggtggtggacctgaccttcacccccggatccaccagggtctccaccatc
ggcagaggaagcagaaacaagaggcccgagggaggtcgtgagtggatggtctgtgaaggt
ttccagttcatcctgaggaaccaggccaacgctctgctcagactgggagtctctccacac
tttaaggaccaggtgttgtgtcagctgtggagacttttcctgcagaagagtcgacaggcc
tacaccagcaacccagtgaggagctccacgttcaaagtgcagaatatggactcggactcg
gagagtgtggccgagtcgtccgtcgtgtccgccagtgagacggacggagagacgaacctg
cccagcaccgcaggatctaacgtagacagctccagcaactggtcgctgggctcgggctca
gtggacggcgtcgcctacgtgacggctcggcggaagcggggtcactgtctgatgagcatg
aagaagactctggctctgatcctcctcgctctgatttggagccgcgagccgctgacgctc
agtgacctgctcaggttggtgaatgaaggtcatgtcccgtatgtgaacgcctacgaggaa
ctgccagaagagatgaggctcgacggcagagacgctgccatcttcagagtcgagcgcatc
ccgtcccaccaggtggtacacaaggaggctcaggctctggttctctacctgcagcttcag
gcttttcctccaatcagccggcaaagtctgctgcaccctgcactgctcagcctgcgctac
ctgaccgacgccaacctgcccgacgaactccacccctgggtctgcagcctgatggagcac
gctggtatggcggatcaaacacgccacacattcgaccctgtgtcttgtcccgccctgccg
cgttacgacgtccagaccgccgccctcatcatcgtcaccatgaagctcatctttggcatg
gacgaccacagcgagtgggatttatccagtgaagctagtgtccacgacgacagagaaaac
atgtttaacctgaggaggtggtacagactgatgcaggccgctctgatcaaagctcagcag
aggagacacaacgacatcgccaggaaacagtggaaggcaaagaaacctatctacccaaag
aggaagttgaaatctgtcgtgatgaaaagaaaaagggttgcagagcaggttcagatctgt
tttgagaagctgtcttcttgtccggtgagtgtcccgcgctgcgatccgtccagcttcagg
ttctgctggggggacgaggacggagcggacggtcccagtctgcaccacaagaagctggac
agagctgtgtctttgaaaaacgacatcctgactccctctaactccacatactggcacccg
gcgctcaggccatgtgactcccggaagtgcgtgagtcattactcggaggtggaggcgacg
ttgcctcggtcattcgtctggctgctgcagctcttctccttcctgctggacgtgaagccg
gactacctgtacgaggaggtgctgagggtggagagacgagtcttcagcagctcaatgcct
ttgaaccaacacctggggaagacggggaagacgacaaccagaaccaggaaaaggaccggg
accgggaccaggacagggaccacgacgtcacagagactacaagaaaccaaagaaacgaga
tga
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