Sulfitobacter dubius: R1T39_06090
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Entry
R1T39_06090 CDS
T09506
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sdub
Sulfitobacter dubius
Pathway
sdub03410
Base excision repair
sdub03430
Mismatch repair
sdub03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sdub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
R1T39_06090 (recJ)
03430 Mismatch repair
R1T39_06090 (recJ)
03440 Homologous recombination
R1T39_06090 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdub03400
]
R1T39_06090 (recJ)
DNA repair and recombination proteins [BR:
sdub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
R1T39_06090 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
R1T39_06090 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
R1T39_06090 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Prok-RING_1
Motif
Other DBs
NCBI-ProteinID:
WOI30275
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All DBs
Position
1222184..1223923
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AA seq
579 aa
AA seq
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MSFLGVETSLTGRRWIGPDVELTRAAELLVQRAGLPDPVCQVLARRGVVDTEAAGFLAPA
LRDLLPDPRSLRDMEAAATRFLSALQNRERIAIFADYDVDGGSSAALLLVWLRDMGHRAT
LYIPDRIDEGYGPNDEAMSALAAEHDLIVCVDCGTLSHGPIAAAKGADVIVLDHHLGGET
LPDALAVVNPNRQDEDGTLAHLCAAAVVFLMLVEAGRQLREAGQKGPDLMGMLDLVGLAT
VADVAPLIGVNRAFVRQGLKVMARRARPGLAALADVARMDTAPTAYHLGFLLGPRINAGG
RIGQADLGARLLATADPHEAAALAERLDQLNTDRREVEAAVRASAMAQAEERGFDGPLAW
AAGPGWHPGVVGIVASRLKEAANRPSIVIGVEDGIGKGSGRSISGIDLGAPIQRLAAEGL
LIKGGGHKMAAGLTVAEDKIDAAMERLGELLTKQGAHLAGPADLNLCGMMMPGAATVELA
EMVDQAGPFGAGAPAPRYAFADMQIRFAKRVGENHLKVSFGDGLGANLEAISFGAYDSPL
GPALENHGGARFHLAGRLDINNFRGRRSVQLRLEDAARA
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgagctttctcggtgtcgaaacatctttgaccgggcggcgctggatcggccctgacgtg
gaactgacccgcgcggcggaactgctggtgcagcgcgcgggcctgcccgacccggtgtgc
caagtgctggcccggcgcggcgtggtcgacaccgaggcggcgggctttctggcccccgcc
ctgcgcgacctgctgcccgacccacgcagcttgcgcgatatggaggcagcggcgacgcgg
tttctatcggccctgcaaaaccgtgagcgcatcgcaattttcgcggactatgacgttgac
ggcggctcttccgctgcgctgttgctagtctggctgcgcgacatgggccaccgtgcgacg
ctctatatccctgaccgtatcgacgaaggctatggccccaatgacgaggccatgtcggcc
ctcgccgccgagcatgacctgatcgtctgcgtcgactgcggcacgctctctcacggcccc
atcgccgcggccaagggcgcggatgtcatcgtgctcgatcaccacttgggcggagagacg
ctgccggatgcgctggctgtggtgaaccccaacagacaggacgaagacggcacgctagcg
catctctgcgccgctgcagtggtgttcctgatgctcgtcgaagcaggccgccagctgcgt
gaggcgggccagaaggggccggatctcatggggatgctggacctcgtggggctggccacc
gtggccgatgtggccccgctgatcggcgtcaaccgcgcctttgtgcgtcagggcctgaaa
gtcatggcccgccgcgcacgccccggtctggccgccctcgccgatgtggcgcggatggac
acggcccccacggcctatcacctcggttttctgcttggcccccgcattaacgcgggcggg
cgcatcgggcaggccgaccttggcgcacggcttttggccaccgctgacccgcatgaggcc
gcggccctcgccgaacgcctcgaccagctcaacaccgaccgccgcgaggtcgaggccgcc
gtgcgcgccagcgccatggcacaggccgaagaacgcggctttgacgggccgctggcatgg
gccgctggccccggctggcaccccggcgtggtgggcatcgtcgcctcacgcctgaaggaa
gccgccaaccgcccctccatcgtcatcggcgtagaagacggcataggcaaaggctctggc
cgctcgatcagtggtatcgacctcggcgcgccgatccagcgccttgctgccgaagggctg
ctgatcaagggcggcggtcacaagatggcagcgggcctgacggtggcagaagacaagatc
gacgcggcgatggaacggcttggcgaattgctcaccaaacagggcgcgcatctggccgga
cctgctgacctgaacctctgcggcatgatgatgcccggcgcggccacggtggaactggcc
gaaatggtcgatcaggccggccccttcggcgcgggcgcccctgccccgcgctatgccttc
gccgatatgcaaatccgctttgccaaacgcgtgggtgagaaccacctcaaagtaagtttc
ggcgacggtctgggcgcgaacctagaggccatttcctttggtgcctacgacagccccctc
ggccccgcgcttgaaaaccacggcggcgcgcgcttccacctcgcagggcgtctcgacatc
aataatttccgcggtcggcgcagcgttcaactgcgtttggaggacgccgcgcgggcctga
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