Sulfitobacter dubius: R1T39_11390
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Entry
R1T39_11390 CDS
T09506
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
sdub
Sulfitobacter dubius
Pathway
sdub00300
Lysine biosynthesis
sdub00470
D-Amino acid metabolism
sdub01100
Metabolic pathways
sdub01110
Biosynthesis of secondary metabolites
sdub01120
Microbial metabolism in diverse environments
sdub01230
Biosynthesis of amino acids
Module
sdub_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
sdub00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
R1T39_11390 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
R1T39_11390 (dapF)
Enzymes [BR:
sdub01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
R1T39_11390 (dapF)
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GFIT
Motif
Pfam:
DAP_epimerase
Motif
Other DBs
NCBI-ProteinID:
WOI30708
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All DBs
Position
complement(2290044..2290877)
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AA seq
277 aa
AA seq
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MYSDQTPGLPFMKMHGLGNDFVVFDARAEAIDVTPAMAQAIGHRQFGVGFDQLAVITQGA
GDAHLTFYNSDGSLSAACGNATRCIARYLMDETGRDSLHLTTARGDLAAKDAGGGLTSVN
MGHPQLNWDEVPLAREMDTLHLPIDGDPVATGMGNPHCTFFVDDAEAVDLSDLGPRAEHD
PLYPERTNVQVAQIVGPDHIRMRVWERGVGVTLASGSSSCATAVAAARRGLTGRAVRIDL
DGGTLHIDWREDGVWMTGPTTHVFSGTFTPEFLESLT
NT seq
834 nt
NT seq
+upstream
nt +downstream
nt
atgtacagcgatcagacccccggattgcccttcatgaaaatgcatgggctaggcaatgac
ttcgtcgtgtttgatgcacgcgcggaggcaatcgacgtgaccccggcgatggcgcaggcc
atcgggcaccggcaatttggcgtgggattcgatcagcttgcggtgattacacaaggggcg
ggcgacgcgcatctgaccttttacaacagcgacggctcgctctccgccgcctgcggcaat
gccacccgctgcatcgcgcgctatctgatggacgagacaggccgcgattcgctgcatttg
accaccgcgcggggcgatctggcggcgaaggacgccgggggcggcttgacctccgtcaac
atgggccacccgcagttgaattgggacgaggtgccactggcgcgcgaaatggacacgctg
cacctgccgattgacggcgaccccgtcgccaccggcatgggcaacccgcattgcaccttt
tttgtcgatgatgccgaggcggtggatctctccgatctcggcccccgcgccgagcatgac
ccgctttatcctgagcgcaccaacgtccaagtggcgcaaatcgtcgggccggaccatatc
cgcatgcgcgtttgggagcgcggcgtgggcgtgacgctggcctcgggctcgtcctcctgc
gccacagccgtcgccgccgcccgtcggggcctcacgggccgcgccgtgcgcatcgacctc
gacggcggcacactgcacatcgactggcgcgaggatggcgtctggatgacggggccgacc
acccatgtcttttccggcaccttcacccccgagtttctggagagcctgacatga
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