Solanum dulcamara (climbing nightshade): 129870003
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Entry
129870003 CDS
T09577
Name
(RefSeq) ATP-dependent RNA helicase DEAH12, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129870003
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sdul03041
]
129870003
Enzymes [BR:
sdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129870003
Spliceosome [BR:
sdul03041
]
Complex C
Other components
Step II factors
129870003
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RBD_DEAH11
KH_DEAH11_2nd
KH_DEAH11_1st
RRM_DEAH11
KH_DEAH11
Helicase_C
IBR
DEAD
OB_NTP_bind
IBR_1
AAA_22
AAA_19
zf-C3HC4_2
KH_SLS1_1
zf-RING_UBOX
ResIII
Helicase_RecD
zf-RING_5
ABC_tran
AAA_29
SLFN-g3_helicase
Arc_MA
AAA_30
T2SSE
Motif
Other DBs
NCBI-GeneID:
129870003
NCBI-ProteinID:
XP_055800540
LinkDB
All DBs
Position
10:71849633..71857930
Genome browser
AA seq
1732 aa
AA seq
DB search
MHDSSSYNRRFPAPAMYHQHSYRPSNNRPCRPGYYSSSYELDRPPGHSHKSPNFVIQLRS
GNRRINRYALDALIEKLPFAPRSSFVFSKGFLSGSLSYDQWSETLEVIVELWRMRLAGSH
SLTPWVKRNVEVPSDEDELKGRVKMVFLEELKMLLVEGELLQKRKKKLELLRDEITELSR
LLKNRNNLRVCNEFLKKREGLEKESDLIRKRIEEFKTGIECIIRHLEETGFEEEEEGSRV
FKIGIEFDWSKIHCLMKRECRRLDDGLPIFAFRQQILRQIHHQQVTVLIGETGSGKSTQL
VQFLADCGVTGNGSIVCTQPRKLAANSLAQRVKQESEGCYEDTSVICYPSYSSGHKFDSK
VVFMTDHCLLQHYMVDKTLSKISCIIVDEAHERSLNTDLLLALIKNLLLQRLDLRLVIMS
ATADAAQLTDYFFGCGTFHVAGRTFPVDIEYVPCESTGCLGVGPISSYVYDVVKMVTEIH
ETEGEGIILAFLTSQIEVEWACEKFQTLSAIALPLHGKLSYEEQHRVFLSFPGKRKVIFT
TNVAETSLTIPGVKYVVDSGMVKESRFEPGTCMSILRICNVSQSSAKQRAGRAGRTEPGR
CYRLYSESDFEGMSHHQEPEIRKVHLGVAVLRILALGIKNVQDFDFVDAPSPKAIEMATR
NLVQLGAVGLKDNAYELTIEGHKIIKLGIEPRLGKLILSCFNQHLGREGVVLAAVMANSS
SIFCRVGSEGDKLKSDCLKVQFCHPNGDLFTLLSVYREWEAVPKEGKNAWCWDNSINAKS
MRRCQETVQELEACLKSELNIIIASYWRWDPQVHTEHDETLKSIILSSLAENVAMYSGYD
QLGYEVPLSGKYIQLHPSCSLLNFDRRPTWVVFGEILSAANEYLVCVTAFEFSHLSALSP
SPLFNFLEMDAQKLEKKVLTGFGSMLLKRFCGKSNSSINNLVSRIRTKYMDERIGIQVNV
DKNEVLLYASSSDMENVLGQVNDALEYESKLLQNECLEKCLFSGGSAASASVVLFGAGAI
VKHLELKKRILAVDIFHSNTKAVDDKELLMFLERNTSGDICAVHKSSGTGHNNEENRWGR
VTFLSPDAAKQAMLLNQVECSGGFLKVIPSRCVFSNDQKQFSSVLRARVNWPRRCCNGVA
IVKCEPNDVGFMVKDFSFVMIGGNTIRSKLSNKCSDSIVISGLNTDLSETEVLEVLSGAT
DGKILDFFFVRGSAVENPPVAACEEALRREISPFMPKKTPFFQSIRVQVFQPEPKDTYMR
ASIMFDGRLHLEAAQALDHIDGKVLSGCLPWQKIRCQQQFQSSVSCPAPVYHVIRNQLDS
LIACLQRRNGVECNLERNENGSYRVKISASATKIVAELRRPLEQLMKGKIVDHVGISPTV
VQLLFSREGTNIMKMVQQETGTYILFDRHSLSVKIFGSSDKIDMAERKFVNSLLALHESK
QLEVHLRGGLLPLDLMKRVVQSFGPDLRGLKLKVPDAEFSLNTKRHCISIKGTKDMKQKV
EEIISEIAQSGLPSQMMDDETDCPICLCELEDAYRLEGCSHTFCQSCLLEQCESAIRSRE
GFPLCCMHKGCGAHILVSDLRSLLSSDKLEELFRASLGAFVAASGGRYRFCPTPDCPSLY
HVTESGEVGAPFVCGACYVETCTSCHLEYHPYISCEKYKVFKDDPDFSLKEWAKGKENVK
KCPVCGFTIEKVDGCNHIECKCGKHVCWVCLVFFSSSDDCYSHLRSIHQAII
NT seq
5199 nt
NT seq
+upstream
nt +downstream
nt
atgcatgattcttcctcctacaatcgccggttcccggcaccggcgatgtatcaccagcac
agttatcgtccgtcaaataaccggccatgtcgtcctggttattattcttcgagttacgag
cttgatcggccgccgggacattcgcacaagtcgccgaatttcgtaatccagcttcgttcc
ggtaaccggagaatcaaccggtacgcattagatgctttaattgagaaattaccgtttgcc
ccacgaagttcgtttgtttttagcaaagggttcctttctgggtcactgtcgtatgatcaa
tggagcgaaacgcttgaagtgattgtggaattatggagaatgaggcttgcaggcagccat
tcgcttactccatgggttaaacgaaacgttgaggttccatctgatgaggatgaattgaag
ggtagggtaaaaatggtatttttggaggagttgaaaatgttgttagtagagggtgaattg
ttacaaaagcggaagaagaaattggaattgttgcgtgatgaaattactgaattgtcgaga
ttactgaagaacaggaataatttgagggtgtgtaatgagtttctgaagaaaagggaaggt
cttgagaaggagagtgatttgataaggaagaggatagaggagtttaaaacaggaattgaa
tgtattattcgacatttggaggagacgggttttgaggaggaggaggagggttcaagggtg
tttaagattgggatagagtttgattggagtaaaattcattgtttgatgaagagggagtgt
cgtaggcttgatgatggcttgccaattttcgctttccggcagcagatactgaggcaaata
catcatcaacaggtgactgtcttaattggtgagactggatcaggaaaaagtactcaattg
gttcaattccttgctgattgcggggtaactggtaatgggtctatagtttgcactcaacct
cggaaacttgcagcgaattctttggcacaaagggtgaaacaggaaagtgaagggtgttac
gaagatacctctgtcatctgctatccgtcatattcatctggtcataagtttgattcaaag
gtagtatttatgacggatcattgccttctacagcactatatggtcgataagactttgtcc
aagatttcatgtatcatagttgatgaggcacatgaaagaagcctaaacactgatctactt
ttagcattgataaagaatcttctccttcagaggctagatctgaggctagttattatgtct
gccacagctgatgcagcccagcttacggattacttctttggctgtggaacattccacgtg
gctggtagaacttttccggttgatattgagtatgttccctgtgaatccactggatgtctt
ggtgttggcccaatctcgtcctatgtgtatgatgttgtcaagatggtgactgaaatccat
gaaaccgagggagagggaataattcttgctttcttgacttctcagattgaagttgagtgg
gcttgtgagaagtttcaaacattgtcagccattgctttacctttacatggcaaactatcc
tatgaagagcagcatagagtttttctcagctttccgggaaagagaaaggtaatattcact
acaaatgttgctgagacatcattgacaattccaggggttaaatatgttgttgattctggc
atggtcaaagaaagcaggtttgagcctggcacttgcatgagtattctcaggatatgcaat
gtcagccagagctcagctaagcagcgggctggccgtgctgggagaactgaaccaggaaga
tgctatagactgtactcagaaagtgattttgaaggtatgtctcatcatcaggaacctgaa
attcgcaaggttcatcttggtgttgcagtgctgaggattcttgccctgggcatcaagaat
gtgcaggattttgattttgttgacgcacctagccctaaagctattgagatggccaccaga
aatctggtacagttaggagctgttgggctaaaagataatgcttatgaattaactatagaa
ggacacaaaataatcaagttgggtattgaacctcggttaggcaaattgatcctcagttgt
tttaatcaacatttgggtagagaaggtgttgttctggctgctgttatggctaattccagc
agcatcttttgtagggttggttccgaaggagacaagctaaaatctgattgcttgaaggtg
caattttgccatccaaatggtgatctcttcactttactttctgtatatagggaatgggag
gctgtgcctaaggaagggaagaatgcctggtgttgggataatagcatcaatgccaaatcc
atgagaagatgccaggagactgtgcaagaactggaagcttgcctcaagagcgaacttaat
atcattattgcaagctactggcgttgggatcctcaggtgcataccgagcatgatgaaact
ttgaaaagtataatactttcttcacttgcagagaatgttgctatgtattctggatatgat
caactaggttatgaagttccactcagtgggaagtacatccaactacatccatcctgttcg
ctgttaaattttgatcgacgaccaacctgggtagtttttggtgaaatcctttctgcagct
aatgagtatctggtctgtgttactgcatttgagtttagtcatctttctgctcttagtcct
tccccattgtttaattttctggagatggatgcccaaaagctggaaaagaaagttttgaca
ggtttcgggagcatgctattgaaaagattctgtggaaaatccaacagtagtatcaataac
cttgtttcacgcattagaactaaatatatggatgagaggattggcattcaagttaatgtt
gataagaatgaggttttgttatatgcttcatccagtgacatggagaatgttttgggccaa
gtgaatgatgcactagagtatgaaagcaagttgttgcagaatgaatgcttggagaaatgt
ctattcagtggtggatcggctgcatcggcctcagtagtcctctttggagctggtgcaatt
gttaaacatttggagcttaagaagagaatcttggctgttgacatatttcattcaaataca
aaagcagttgatgataaggaactgctgatgtttttggagagaaacacatcaggtgatatt
tgtgcagtgcacaagtcctcaggtactggccacaacaatgaggagaacagatggggaagg
gtaacatttctttcccctgatgctgctaaacaagctatgttgttgaatcaggtagaatgt
agtggtggctttctaaaagttattccttcgaggtgtgtattttctaatgatcaaaagcag
ttctcctctgtcctcagagctagagtaaattggcctcgtagatgctgtaacggtgtagct
attgtaaaatgtgagccaaatgatgttggttttatggtaaaagatttctcttttgtaatg
ataggtggaaacactatccgttcaaagctaagcaataagtgctctgatagcatagtaata
tcaggacttaataccgatctttctgagacagaggtacttgaggttttgagtggagcaaca
gatgggaaaattctggattttttctttgtaagaggaagtgctgtggaaaatcctccagtt
gcagcttgtgaagaagcacttaggagagaaatatcccccttcatgcctaaaaaaacacct
tttttccagtctattcgtgttcaggtcttccaaccagaaccaaaggacacttacatgcga
gcgtctatcatgtttgatggaaggcttcatcttgaagcagctcaggctttggatcatatt
gatggcaaggttttatctggatgtcttccctggcagaagataagatgtcagcaacagttt
cagagttcggtttcctgtcctgcaccagtttaccatgttattaggaaccagctggattct
ttaattgcatgcctccagcgaagaaatggtgtggagtgcaatctggagagaaatgagaat
ggttcttatagggttaaaatatctgcaagtgctacaaagattgtggcagaattgagaagg
ccattggagcaactgatgaaaggcaagattgtggatcatgtgggaatttctccaactgtt
gttcaacttctattttctagggaagggactaatatcatgaagatggttcagcaggaaacg
ggaacctatattctttttgacaggcatagcctttctgtgaaaatctttggttcctccgac
aagattgatatggctgagcggaagtttgttaactcccttctggcactacatgaaagcaag
caacttgaagtgcatcttcgtggaggacttttgcctcttgacctgatgaaaagagttgtt
cagagttttggaccagatcttaggggtctcaaactaaaggtgcccgatgcagaattctct
ctgaacaccaagcgccattgcatctcaatcaaaggtaccaaagacatgaagcaaaaagtt
gaggagataatttctgaaattgctcaaagcggtcttccaagtcaaatgatggacgatgag
actgactgccccatttgcttgtgtgaactggaggatgcgtacagacttgaaggttgttcc
cacaccttctgtcagtcgtgcttgctggagcagtgcgagtctgcaatcagaagccgtgaa
ggtttcccgctatgctgtatgcataaaggttgtggggcacatattctagtttctgatttg
aggtctctgttgtcgagtgataagttggaggaacttttcagggcttctttgggggcattt
gtagcagcaagtggaggtcgctaccggttttgccctacccccgactgcccttcactttat
catgttaccgaatcaggagaagttggtgcaccttttgtctgtggtgcatgttatgtggag
acgtgtactagttgccacctagagtatcacccctacatctcatgcgagaagtacaaggtg
ttcaaggacgacccagatttctctctaaaggaatgggccaaggggaaagagaatgtgaag
aaatgtcctgtttgcgggttcacgatagaaaaggtggatggctgcaatcatatcgagtgc
aagtgcggaaaacatgtctgctgggtttgtttggtattcttcagcagcagcgacgattgc
tatagccatttgaggtctattcaccaggccattatatga
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integrated database retrieval system
