Solanum dulcamara (climbing nightshade): 129870004
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Entry
129870004 CDS
T09577
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129870004
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdul03021
]
129870004
03041 Spliceosome [BR:
sdul03041
]
129870004
03036 Chromosome and associated proteins [BR:
sdul03036
]
129870004
Transcription machinery [BR:
sdul03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
129870004
Spliceosome [BR:
sdul03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
129870004
Complex B
129870004
Complex C
U2 SnRNP specific factors
129870004
Chromosome and associated proteins [BR:
sdul03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
129870004
TFTC complex
129870004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
129870004
NCBI-ProteinID:
XP_055800541
LinkDB
All DBs
Position
10:complement(70458429..70464934)
Genome browser
AA seq
1211 aa
AA seq
DB search
MYLYSLTLQQPTGIICAINGSFSGGKVQEIVVARGKVLDLLRPDDNGKLQTLLSVEIFGA
IRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNCFDKVHQETFGKSGCRRIVPGQYL
AIDPKGRAVMVGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTITFSICGVDCGFDNPI
FAAIELDYSEADQDPTGQAANEAQKHLTFYELDLGLNHVSRKWSEQVDNGANLLVTVPGG
GDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRVDLPAERGVLIVSAAMHKQKTMFFFLLQ
TEYGDIFKVTLDHDNDRVKELKIKYFDTIPVTSSLCVLKSGFLFASSEFGNHALYQFQAI
GDDPDVEASSSTLMETEEGFQPVFFQPRKLKNLVRIDQIESLMPIMDMKIINLFEEETPQ
IFSLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFANAT
LVLSIGETVEEVSDSGFLDTTPSLSVSLIGDDSLMQVHPSGIRHIREDGRINEWRTPGKR
TIVKVGSNRLQVVIALSGGELIYFEVDMTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTIRILSLDPDDCMQVLSLQSVSSPPESLLFLEVQASVGGEDGADHPASLFL
NAGLQNGVLFRTVVDMITGQLSDARSRFLGLRAPKLFSIAVRGRRAMLCLSSRPWLGYIH
QGHFLLTPLSYESLEFAASFSSDQCAEGVVAVAGDALRVFTIERLGETFNETAIPLRYTP
RRFVLQPKRKMVIMIESDQGAYTAEEREAAKKECFEAAGNVENGNAEQMENGEDEDGSDP
LSDEQYGYPKSESGRWVSCIRVLDPRTTQTTCLLELQDNEAAFSICTVNFHDKEHGALLA
VGTAKGLQFWPKKSFEAAYIHIYKFKEDGKVLELLHKTQVDGVPLALCQFQGRLLAGIGS
VLRLYDLGKKRLLRKCENKLFPNSITAIHTYRDRIYVGDMQESFHYCKYRRDENQLYIFA
DDTVPRWLTAAQHVDFDTVAGADKFGNIYFVRLSQDVSDEIEEDPTGGKIKWEQGKLNGA
PNKVEEIVQFHVGDVVSCLQKASLIPGGGECIIYGTVMGSVGAMLPFTSRDDVDFFSHLE
MHLRQEFPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDMQRKIADELDRTPGEIL
KKLEEIRNKII
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgtatctctacagtctcactctccagcaacccaccggcataatctgtgctatcaacggc
agcttttcgggcggaaaagtacaagaaatcgtcgtcgcccgtggaaaagtacttgacctc
cttcgtcccgatgataatggtaagcttcaaactctattatctgttgaaatcttcggcgct
atacgttccttagcacaatttcggttaaccggtgctcaaaaggattatattgtagtcggg
tcggattcgggtaggatagtgatattggagtataataaagagaagaactgctttgataaa
gtacatcaggagacttttgggaaatcgggttgtaggaggatagttccgggtcaatatttg
gctattgatccgaaaggtagggctgtgatggttggtgcttgtgagaagcagaagcttgtg
tatgttttgaatagggatactgcagctaggttaacgatttcgtcgcctttagaagctcat
aagagccatacgattacgttttcgatatgtggggttgattgtggatttgataacccgata
tttgctgctattgaattggattattcggaggcagatcaggatccgaccggtcaagctgcg
aatgaggctcaaaagcatttgacattttatgaattagatttagggcttaatcatgtatcg
aggaagtggtctgaacaagttgataatggtgctaatttacttgtgactgttcccggaggt
ggggatggtccgagtggtgtgcttgtttgtgcggagaattttgtgatatataagaatcag
ggacaccctgatgttagggctgttattcccaggagggtagatttgccagcagaacgtgga
gttttgattgtttcggctgctatgcataagcagaagacaatgtttttctttcttttgcaa
actgaatatggagatatctttaaggtgacgttggaccacgacaatgatagggttaaggag
ttaaagatcaagtattttgatacaattccggtcacttcttctctgtgtgtattgaagtca
gggttcctctttgcttcgtcagagtttgggaatcatgccttgtatcagtttcaggctata
ggagatgatccagatgttgaagcttcatcatcgactttaatggaaactgaagaaggtttt
cagcctgtatttttccagccaaggaagctaaagaatcttgttaggattgatcagattgag
agcttgatgccaatcatggatatgaaaatcataaatctttttgaggaagaaactccacaa
atattttcactttgtgggaggggtcctcggtcttcgttgcgcatacttaggcctggttta
gctgttagtgaaatggctgtgtcacagcttcctggggttccaagtgccgtctggactgtg
aaaaagaatgttaatgatgagtttgatgcctacattgttgtctcttttgcaaatgcaact
cttgtgctttctattggtgagacagttgaagaagttagtgacagtgggtttcttgatact
actccatctctttctgtttcattgattggtgatgattcgttgatgcaagttcatcccagt
ggaataaggcatattagagaagatggccgtattaatgaatggagaactcctggaaaaaga
accattgtcaaggttggttctaatagacttcaagtggtaattgcactaagtggaggggag
cttatatattttgaagttgatatgactggccagttgatggaagttgagaagcatgagatg
tcaggtgatgtagcttgtctggacattgcccctgttcctgagggaagacaaaggtcccgt
ttccttgcagttggatcatatgataacactattcgtatcttgtcgttggaccctgatgac
tgtatgcaggttttgagcctgcaaagtgtatcttcaccacccgagtctctcctatttctt
gaagttcaggcctctgttggtggagaggatggtgcagatcaccctgccagcctttttctt
aatgctggtttacaaaatggagttttattcaggactgtggtagatatgataactgggcag
ctttcagatgcacgttcacgtttcttggggcttagagcccctaagctcttctccattgct
gtgagaggacggcgtgctatgctctgcctatcaagtagaccatggctaggttacatacac
caagggcattttcttttgacacctttatcgtacgagagtcttgaatttgcagcctcgttt
tcatccgatcaatgtgcagaaggtgtggtagcagttgcgggggatgcgttgagggtcttc
acgatagagagattgggcgagactttcaatgaaacagctatacccttgaggtatacacca
agaaggtttgttcttcaacccaaacggaagatggtcataatgattgagagtgaccaggga
gcatatactgcagaagagcgtgaagctgccaaaaaagagtgctttgaggcagctgggaat
gttgaaaatggaaatgcagaacaaatggagaatggtgaagatgaggatggtagtgatcca
ctatctgatgaacagtatggttatcctaagtcggagtcaggaagatgggtttcctgcatc
agagtccttgatccaaggacaacacaaaccacttgtctgctagagcttcaggataatgag
gctgcgtttagcatatgcactgttaacttccatgacaaggagcatggagctctgttagct
gttggtactgccaagggcctccagttttggcccaaaaaatcgtttgaagcagcatacatt
catatttacaaatttaaagaggatgggaaggtcctagagcttttgcacaagacacaggta
gatggtgtgcctcttgcactatgtcagttccaaggaagactgctggctggtattgggtct
gtccttaggttgtatgatttggggaagaaaagactgctccgaaaatgtgagaacaagcta
ttccccaactcaatcacagctatccatacctatcgtgatcggatttatgttggtgacatg
caagagtcatttcattactgtaagtataggcgtgacgaaaatcaactgtacatatttgct
gatgacacggttccgagatggctaactgcagcacaacatgtagattttgacactgtggca
ggagctgataagtttgggaatatctactttgtgcgattatctcaggacgtttcagatgag
attgaagaagatcctactggtggaaaaataaaatgggagcaggggaagttgaatggagcc
ccaaataaggttgaggaaatagtacagtttcatgttggtgatgtggtctcttgcttgcag
aaggcatcacttattccaggagggggcgaatgtataatctacgggactgtgatggggagt
gttggggcaatgcttccatttacctcgagggatgatgttgacttcttctctcatttggag
atgcatttgaggcaggagttcccaccgttatgtggcagggatcacatggcctacagatct
gcctacttccctgttaaggatgtaatagatggagacttgtgtgaacaattcccaaccttg
cccatggatatgcagcgcaaaattgcagatgagttggataggacaccaggcgagattctg
aaaaagcttgaagaaataagaaacaaaattatttga
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