Solanum dulcamara (climbing nightshade): 129870028
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Entry
129870028 CDS
T09577
Name
(RefSeq) general negative regulator of transcription subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129870028
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129870028
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129870028
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
129870028
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Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
129870028
NCBI-ProteinID:
XP_055800574
LinkDB
All DBs
Position
10:complement(22402528..22439818)
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AA seq
854 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALMDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVGELESQIDNFEAELEGLSVKKGKQRPPRLVHLETSIVRHKA
HIMKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDEFSDVDELYSTLPLDKVES
LEDLVTIGPPALVKGVTVSSAVLSVKTSLASPPAQASVAVTSSAQQAVSVQDQADEAASQ
DSSSETVVRTPPPKSSAVVTSAPTTPAGSHATPGAAAAALSPTSMSNAVKEDDLTSFPGR
KSSPVLSETTLRGVSRGALSNQPVASIALGSAGSVTGNGGLGAIPASEVTKRNILVSEER
LGSSSMGQPLVSPLANRMMMSQTAKATDGIGVTDGANLGDATVMTGRVFSPSVGPGMQWR
PGSSFQNQNEAGQFRGRTEIAPDQREKFLQRFQQVQQQGQSNLLGVPPFSGGNLKQFSSQ
QQNPLLPQFNSQSSSVSPQLGLGVGVQAVGINNIASSASLQQQSDVGHSKADELQQQQIL
LEDSSADSSANAGLGKNLLNEDDMKASYGLDTAMQGGVTGSVAEASPRPRDTDLSPGQPL
QSSQSSGSLGVIGRRSVADLGAIGDSLSASTANSAGMHDQLYNLQMLESAFYKLPLPKDS
ERAKSYTPRHPAVTPPSYPQVQAPIVNNPAFWERLGADNYGTDTLFFAFYYQQNTYQQYL
AAKELKKQSWRYHRKYNTWFQRHEEPTVATDDFEQGTYVYFDFHIANDEQHGWCQRIKQE
FTFEYNYLEDELIV
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atgggagcgagtcgaaagctacagggtgaaattgatcgagttctgaagaaagtgcaagaa
ggcgttgatgtcttcgatagcatatggaacaaggtttatgacacggataatgccaaccag
aaggaaaaatttgaagcggatttaaaaaaggagataaaaaagcttcagaggtatagagac
caaattaaaacatggattcaatcaagcgaaatcaaagataaaaaggtaagtgcatcatat
gagcaagcgttgatggatgctcgtaagcttattgagcgtgaaatggagcgattcaaaatc
tgtgagaaagaaactaagaccaaagcattttcaaaagaaggcttgggccaacagcctaag
acggacccaaaggagaaggctaagtcagagacaagagattggttgaataatgtggttggg
gagctcgaaagtcaaattgacaatttcgaggctgaattggaaggactttcagttaaaaaa
gggaagcagaggcccccaagattggtacatttggaaacatccattgttcggcacaaggct
catataatgaagttggagttaattttaagattactggataatgatgaattgagtcctgag
caagtcaacgatgtcaaggatttcctcgacgattatgtggaacgaaatcaggaggatttt
gatgaattcagtgatgttgatgagctctatagcactttaccactggataaggtggagtct
cttgaagatctggttaccatcggtccacctgctcttgtcaagggtgtcactgtttccagt
gcggttttgagtgtgaaaacttctctggcctctccacctgctcaagcatcggtggctgta
acatcttcagcacagcaagctgttagtgttcaggatcaggctgatgaagcagcatcacag
gacagtagctctgaaacagttgttaggaccccacctcctaaaagtagtgcagttgttact
tctgctcccacaacgcctgctgggagtcatgcaaccccgggtgctgctgctgctgcttta
tctccaactagcatgtcaaatgcagtaaaagaagacgatttgacaagtttcccaggtcga
aagtcttcccctgtccttagtgaaactactttaaggggtgttagtagaggtgctctatct
aaccaacccgtggctagtattgcacttggttctgctggttcagttactggcaatggaggt
ctaggagctattcctgcttctgaagttacaaagagaaatatcttagtttcagaggagagg
cttggaagtagcagcatgggacagcctttggtatcccctctggctaacagaatgatgatg
tcacaaacagctaaggctacagatggaattggtgttactgatggggcaaatctcggtgat
gctacagtcatgactggtagagttttctctccttctgttggtcctggtatgcaatggagg
cctggtagttcctttcagaatcaaaatgaagcgggccaattccgtggtagaactgaaatt
gcacctgaccagagggagaagtttttgcaacgatttcagcaagtacagcagcaaggtcag
agtaatcttcttggtgtacctccatttagtggtggaaaccttaagcagttctcgtcccag
caacagaatccacttttgccacagttcaattctcaaagctcctctgtctctcctcaactt
ggactgggagttggggtccaagcagttggtattaacaacattgcctcatctgcgtctttg
cagcagcaatcagatgtaggccactcaaaagctgatgaattgcagcaacaacagattttg
cttgaggattcttctgcagattcttctgcaaacgctgggcttgggaaaaatcttttgaat
gaggatgatatgaaggcttcatatggattagataccgcaatgcagggaggagtcactggc
tctgttgctgaagcatcccctaggccaagggatacagatctatctcctgggcaaccattg
caatccagtcagtcatctggaagtcttggggttattggtcgaaggagtgttgctgacctt
ggagcaattggtgatagcctgagtgcgtccactgcaaattctgcaggaatgcatgaccaa
ttatacaacttgcagatgcttgaatctgccttttacaaacttcctctacccaaagattct
gaacgtgcaaagagctatacaccgaggcaccctgcagttacccctccaagttatccccaa
gtacaggctcccattgtcaataatcctgccttctgggaaagacttggagctgataactat
ggcactgacactctgttctttgcattttactaccaacagaatacttatcagcagtatctg
gctgctaaggagttgaagaaacagtcgtggagatatcacagaaagtataacacatggttt
cagcggcatgaggagccaactgttgccactgatgactttgaacagggaacatatgtctac
tttgatttccacatcgccaatgatgaacaacatggatggtgccagcggatcaagcaggag
ttcacatttgagtacaattatcttgaagatgagctcattgtatag
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