Solanum dulcamara (climbing nightshade): 129870029
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Entry
129870029 CDS
T09577
Name
(RefSeq) protein PAT1 homolog isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129870029
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129870029
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129870029
mRNA degradation factors
5'-3' decay
Decapping complex
129870029
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
TFIIA
Motif
Other DBs
NCBI-GeneID:
129870029
NCBI-ProteinID:
XP_055800577
LinkDB
All DBs
Position
10:complement(14756759..14767665)
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AA seq
818 aa
AA seq
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MDGFEGGTSSSLMEFGDNRPAGAAAEEKFDASQYAFFGSDVVEEVELGGLEDEEDGLPPV
GFDDEEYQLGREEGEALGSLSEIDDLSSTFSKFNKDDGGAIKPGFIGDREYRESSSAVEW
SQDADFRSWIDRQALDGGESNDSRRWPSQPYSSAVHLLESKTLYRTSSYPEQQQQHEYQH
QTPNHHYSSEPVIIPELPFTSFPPSARHPQASANNQLQNPNGPNHPGGQQIPVSSPNFSP
FLNTANQLTASHLGPQYGGKFAQGTLPGLPLHNQIPSQWLKQSTLYPGEQSSLTSNMMPQ
QSHRQNGFAPPHGGLQQPQQPVQQHPLHPPYGHLPGLQSQLFNHHMSPPSQMMNNFDMLG
LADLRDQKAKLMLRGRQGLHYSQLGFDVSSQRNVSAWPRFRSKYMSTDELENILRAQLAA
THSNDPYVDDYYHQACLAKKSAGAKLKHHFCPNNLRDGSARTRANTDPHPFLQVDALGRV
AFSSIRRPRPLLEVDPPKSSATGCIEQKMSEKPLEQEPMLAARVTIEDGLCLLLDVDDID
RFLQFNQVPDGGDQLKRRRQVLLEDLASSLQLVDPLGKSGQSVNLAAKDDVVFLRIVSLP
KGRKLLVRYLQLLFPGSELTRVVCMAIFRHLRFLFGGLPSDHGATETTVNLGRTVSLCIC
EMELKALAACLASVVCSAEPPPLRPVGSPAGDGASVVLKSILERATELLRDPHAAGKCSM
PNRAFWQASFDAFFGLLTKYCFSKYDSVMQCFLTQVPPDVAVGGSDAAKAISREMPVELL
RASLPHTSEQQRKILLEFAHRSMPVLGVGSQSGGSGGT
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atggacggatttgaaggcggtaccagtagtagtctcatggaattcggtgacaaccgccct
gcaggtgctgcagcagaggaaaaatttgatgcttcacaatatgccttctttggtagtgac
gttgttgaagaagttgaactgggtggattggaggatgaggaggatggtcttcctccggtt
gggtttgatgatgaagagtatcaattaggccgagaagagggtgaagctcttggatcttta
tctgagattgatgaccttagcagcacattttccaagtttaacaaggatgatggtggcgcc
ataaagccaggatttattggtgaccgggaatacagagagagctcatcagctgttgagtgg
tcacaagatgcagattttcgtagttggattgaccggcaagctcttgatgggggtgaaagc
aatgacagcagaagatggccatcacagccatactcttctgctgttcaccttttggaatca
aagactttgtacaggacttcctcataccctgagcaacaacagcaacatgaatatcaacat
caaactccgaaccaccattactccagtgaaccagtaatcatcccagaattgcctttcact
tcatttcctcctagtgcgaggcatccacaagcttccgcaaataaccagttgcagaatcca
aatggtccaaatcatcccggtggacagcaaattccagtttcctcgcctaacttttcgccc
ttcttaaacactgcaaatcaattaactgcctcgcatcttggcccgcagtatggtggaaag
tttgctcagggcacgcttcccgggcttcctcttcataatcaaattccaagccaatggttg
aagcaatctactttgtatcctggggagcaatcaagcctgaccagtaatatgatgccccag
cagtcacatcgccaaaatggtttcgcgccaccacatggggggctccagcaaccccagcag
cctgtccaacagcaccccttgcatccaccctatggccatttgccagggttgcaatcccag
ctgtttaatcaccatatgtctccaccctcgcagatgatgaacaattttgatatgcttggg
ttggctgatttgagagatcaaaaggcaaaattaatgctgagaggcagacagggcctgcat
tattctcaactaggctttgacgttagtagccagagaaatgttagcgcatggccaagattt
agatccaagtacatgtcaacagatgaattagagaatattcttagagcacagctggctgct
acccatagcaatgatccttatgttgatgattattatcaccaagcttgtctggccaaaaag
tctgctggtgcaaagttgaagcaccatttctgcccaaataatttgagggatggtagtgct
cgaactcgtgctaatactgatccacatccttttctccaggttgatgctcttggaagggtt
gctttttcttctattcgcaggccccgcccgcttcttgaagttgatccaccaaaatcatct
gctactggatgcattgaacagaaaatgtctgagaaacccctggagcaagagccaatgcta
gcagctagggtgactattgaggatggactctgtcttcttcttgatgttgatgatattgac
cggttcctacagtttaaccaggttccagatggaggagaccagttgaaacgcaggcggcag
gttctgcttgaggatttggcctcatcacttcagctagttgacccccttggcaaaagtggc
cagtctgtgaatttggctgctaaagatgatgttgtctttttgaggatcgtctcacttccc
aagggccggaaattgctagtacggtaccttcagcttcttttccctggaagtgaactaacc
agggtggtttgcatggctattttccgtcatctaaggttcttgtttggcgggcttccaagt
gatcatggggcaactgagactactgtgaaccttggaaggactgtgtcactgtgtatttgt
gaaatggagctcaaagcacttgctgcctgtcttgcatcagtggtttgttcagcagagcca
cctccgctccgtcccgttggaagccctgctggagatggggcatctgttgttctaaaatct
attcttgagagggcgactgagctcttaagagacccgcatgctgctggcaagtgcagcatg
cctaatagggcattctggcaggcctcgtttgatgctttttttgggttactcacaaaatac
tgtttcagcaaatacgacagtgtaatgcaatgtttcttgacacaagtcccaccagatgtg
gctgttggtggatctgatgcagccaaagctattagtagggagatgcctgttgaacttttg
cgtgcaagtcttcctcacactagtgaacaacagagaaagatcctgttagaatttgcacat
aggtccatgcctgtgctgggtgttggtagccaaagtgggggaagtggtggtacatga
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