Solanum dulcamara (climbing nightshade): 129870085
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Entry
129870085 CDS
T09577
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129870085
03041 Spliceosome [BR:
sdul03041
]
129870085
03036 Chromosome and associated proteins [BR:
sdul03036
]
129870085
Enzymes [BR:
sdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129870085
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
129870085
mRNA cycle factors
Common to processing body (P body) and stress granule
129870085
Spliceosome [BR:
sdul03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
129870085
Chromosome and associated proteins [BR:
sdul03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
129870085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
129870085
NCBI-ProteinID:
XP_055800648
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All DBs
Position
10:28186007..28193840
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AA seq
614 aa
AA seq
DB search
MRNSWADSVENVASDNVGPSGGSGASASTRRSSYVPPHLRNKLMAAEPLAPSQGGPPSGN
DRSGFNGPTSGSRWGGSRPDYGRQGGYSGGGRSGGGWGGRGGGWGREREVNPFGNDADVD
LEQSSDQENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEAVNLNIRRCKYVKPTPV
QRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGNFPQRPRGVRTVFPLALILSP
TRELSMQIHEEAKKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLFDLLERA
KVSLQMIRYLALDEADRMLDMGFEPQIRRIVEQMDMPPPGERQTMLFSATFPKEIQRLAS
DFLANYIFLAVGRVGSSTDLIVQRVEFVHDGDKRSHLMDLLHAQMANGVHGKHALTLVFV
ETKKGTDALEHWLCINGFPATAIHGDRTQQEREQALRTFKRGDTPILVATDVAARGLDIP
HVSHVINFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNDGNLSMAKPLADLMQEANQEVP
EWLTRYASRSYGGGRNRRAGGGRFGGRDFRRDSSYNRSGGGGGGGVNYYDGGNSSGGYGN
YSGGYGPGVTSAWD
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgaggaactcatgggcagattctgttgagaatgtagcttctgataatgttgggccaagt
ggggggagtggagcttctgcttctacaagaagatcatcttatgtcccaccacaccttcgc
aacaaactgatggcagcagaacctctagctccatcgcagggtggcccaccttctggtaat
gaccgctcaggcttcaatggaccaactagtgggtctcgatggggtggttctaggccagat
tatggacgccaaggggggtatagtggtggtggccgcagcggaggtggttggggtggtaga
ggaggtggttggggtagagagcgggaagttaacccttttggtaatgatgcagatgtggac
ttggagcaatcgtctgatcaggagaatacaggaataaattttgatgcttatgaggatatt
ccagtggaaacaagtggagaaaatgtgccacctcctgttaatacattcgccgagatagat
ttaggggaggccgttaacttgaatattaggaggtgcaaatatgtgaagccgactcctgtc
cagcgatatgcgattcccatctccttagcaggacgagatctcatggcctgtgcccagact
ggatccggcaagacagctgccttttgtttcccaattattagtggaatcatgagggggaat
tttccgcaacggcctcgcggggtgcggacagtgtttccccttgctcttattctctcacca
acaagagagctctcaatgcagatacacgaggaagctaaaaaattttcttatcagactggt
gttagagtagtagtggcctatggtggagccccgattaatcagcagctccgagagcttgag
agaggagttgatattcttgtggcaactcctggaagactgttcgatttacttgagagagca
aaagtttcattacagatgattagatatttagctctcgatgaggcagatcgtatgctggac
atggggttcgaacctcaaattagaaggatagtggagcaaatggatatgcctccacctggt
gaaagacagactatgctgttcagtgctacattcccaaaagagattcagagactggcctct
gattttcttgcaaactacatatttttggcagttggacgggttggttctagtactgacttg
attgttcaacgagttgaatttgttcatgatggtgacaagagaagccatcttatggatcta
cttcatgcacagatggctaatggggttcacggcaagcatgctctaactttggtatttgtc
gaaacaaagaagggtactgatgcattggagcattggctgtgtattaatgggtttcctgca
actgccattcatggtgataggactcagcaggaaagggagcaagcgttgagaacattcaag
agaggagataccccaattttagttgcgacggatgtggctgctcgaggccttgatatccct
catgtttctcatgttatcaactttgatcttcccaatgacattgatgattatgtgcaccgt
ataggaaggacaggtcgtgcaggaaagacaggattagcaactgctttctttaatgatggt
aacctttcgatggccaaaccactagctgacttgatgcaagaagctaatcaggaggtacct
gaatggttgactcgttatgctagccgttcatacggaggaggtagaaacaggcgggctggt
ggaggccgttttggtgggcgtgacttcaggagggattcctcatacaatagaagtggaggt
ggaggtggaggtggtgtgaactactatgatggaggtaatagtagtggtggttatggcaat
tacagtgggggatatggtcctggagtaactagtgcttgggactag
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