Solanum dulcamara (climbing nightshade): 129870105
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Entry
129870105 CDS
T09577
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129870105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129870105
03012 Translation factors [BR:
sdul03012
]
129870105
Enzymes [BR:
sdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129870105
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
129870105
Translation factors [BR:
sdul03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
129870105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
ATPase
AAA_11
T2SSE
Dicer_dimer
PhoH
Motif
Other DBs
NCBI-GeneID:
129870105
NCBI-ProteinID:
XP_055800682
LinkDB
All DBs
Position
10:65226022..65257235
Genome browser
AA seq
1187 aa
AA seq
DB search
MSLYPLHFFTYISHYRNLKPFSIPPPSLTMKDRPLSSCGAVYVPPHQRLRSVITVPSAVS
PQPGGLRPTAIDQKPNPNTFKSYFPPQKKIQQQPVRLQHKRSSEFDEVSEEGSACDIELT
PYQGAATSDNAEAWKWNLTALLHNNDKQEVLSREKKDRRDYEQIAALASKMGLYSNLYSK
VVVVSKLPLPNYRFDLDDKRPQREVILSPGLPRRVDVFLGEYLSCKPRSMDVLSRSSSNG
SITTDEGLFEQSEAHPQSKASMKKILWERSMQMQSEQKTWQESPEGRKMLEFRSTLPAYK
EKDAILSAISQNQVVIVSGETGCGKTTQIPQFILESEIEAVRGDMCSIICTQPRRISVMA
VSERVAAERGELLGETVGYKVRLEGVKGRDTHLLFCTTGILLRRLLVDRNLKGITHVIVD
EIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLDAELFSSYFDGAPLVHIPGFTYPVH
THFLENILEISGYRLTLDNQIDDYGQERMWKMNKQAPRKRKSQIASAVEDTLRAADFQEF
SPDTQESLSCWNPDCIGFNFIEYILCHICENERPGAVLVFMTGWDDISSLKDKLQSHPIL
GNTSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNIAETSITIDDVVFVIDCGKAK
ETSYDALNNTPRLLPSWISKVSARQRRGRAGRVQPGECYHLYPRCVYDAFADYQLPEILR
TPLQSLCLQIKSLKLGSISEFLSRALQSPELLAVRNAIEYLKIIGAFDESENLTVLGRYL
TMLPMEPKLGKMLILGAILNCLDPILTIVAGLSVRDPFLTPLDKKDLADAAKAHFSRDFS
DHLALVRAYEGWRDAERDLAGYEYCWKNFLSAQSMKAIDSLRREFYSLLNDTGLVDSNIT
MYSSWSYDEHLLRAIICYGLYPGICSVQHNEKSFSLKTMEDGQVLLHSNSVNARDSRIPY
PWLVFNEKIKVNSVFLRDSTAISDSVLLLFGGTISKGEVDGHLKMLGGYLEFFMNPTIAE
MYRSLRRELDELIHTKLLNPRMDVHSYHELLSAIRLLISEDHCGGRFVFNHQILLPSKPC
AGAPPPAPTSRIESGPGGDNAKSQLQTLLNRAGYATPTYKSLQLNNNQFRATVEFNGMQI
MGRPCNNKKQAEKDAAAEALNWLLEGHLAGPDYIEQMSQFLKKSKKA
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atgagtctatatcctctccattttttcacatacatttcacattacagaaaccttaaaccc
ttcagcattccaccaccgtcgttaacgatgaaggaccggccgctgtcatcatgcggcgct
gtttacgtccctccacatcaacgcctccgttcagtaatcactgttccctctgctgtttct
ccacaacctggcggcttacgtcctacagcaatcgatcaaaaacctaatcctaacactttc
aagtcctactttccacctcagaagaaaattcagcagcaaccagtgcgactgcaacataag
agaagttctgaattcgatgaggtttctgaggaaggttccgcttgtgatattgagcttacg
ccatatcagggtgctgccacatctgataacgctgaagcatggaaatggaacctcaccgct
ctgctacacaacaatgataaacaagaggttctctcaagggagaaaaaagataggcgtgat
tatgagcaaatagcagctttagcaagcaaaatgggtttatatagcaacctatattcaaaa
gtagttgttgtcagcaagcttccattacctaactacaggtttgatttggatgataagcgt
cctcagagagaggtgatcctatctccgggtttaccaagacgagtcgatgtttttcttgga
gaatacttgtcttgtaagccaaggagcatggatgtactttcacgatcaagcagtaatggc
agtataactactgatgagggcctatttgagcagtcagaggcacaccctcaaagtaaggct
tccatgaagaaaatcctttgggaaaggagtatgcaaatgcaatcagagcagaaaacttgg
caggaatcacctgagggtaggaagatgctggaatttcgtagcactctacctgcgtataag
gaaaaagatgcaatattaagtgccatttcacagaaccaggtggttattgtctctggtgaa
actggctgtgggaagaccacacagattccgcaatttattttagagtctgaaattgaggct
gttcgtggagacatgtgtagtatcatatgtacgcagccaagaagaatatctgttatggca
gtatctgaaagagttgctgcagagagaggggagttgttgggtgaaacagttggatataaa
gttaggctagaaggtgttaaaggaagggacactcacctcctcttctgtaccactggtatt
ttgttaagaagactgctagttgatagaaatctgaagggaattacgcatgtaattgtggac
gagattcatgaacgtggaatgaacgaagactttttgctaatagtgcttaaggatttactc
ccacgccggccagaattaaggttgattttgatgagtgccaccttagatgcagagcttttc
tcttcatactttgatggggctccactagtccacattccgggatttacatatccagttcac
actcatttcctggaaaatattctggagatctcggggtacaggttgacgctggacaatcag
attgatgattatggtcaggagagaatgtggaaaatgaacaagcaagctccaagaaaaagg
aagagccagattgcttctgctgttgaggacaccctcagagctgctgatttccaagaattt
agccctgacacacaggagtctctgtcttgttggaatcctgattgtataggcttcaatttt
atagaatatattctatgccatatttgtgaaaatgaaaggcctggtgctgttttagttttt
atgactggttgggacgacataagttccttgaaggataagctacaatctcatcctatcttg
gggaatacaagccgtgttttattgctggcatgccatggttctatggctagttcagagcag
aggttgatatttgacaagcctgaagatggagtgaggaagattgtgttggctacaaatatt
gctgagacgagtatcacgatcgatgatgtagtttttgttattgactgtggcaaggcaaaa
gagacgtcatatgatgcacttaataatactcctcgtttgcttccttcttggatttcaaag
gtttcagctcggcaaagaaggggacgagccggacgtgttcagcctggagaatgctatcat
ctttatcccagatgtgtatatgatgcttttgcagattatcaattaccagaaattctgagg
actcctttgcaatccctttgtttgcaaattaaaagtttaaaactcggtagcatttctgag
ttcctctcgagggctttgcaatctcccgagttattagcggttcgaaatgctattgagtat
ctgaaaatcattggggctttcgatgagagtgaaaatttgactgttctaggacgttactta
acaatgcttccaatggagcctaaactcgggaaaatgcttatacttggggcaattttgaat
tgtttggacccaatattaactattgttgctggtcttagtgtccgagatcccttcttgaca
ccacttgacaaaaaagatcttgcagacgctgctaaggctcatttttcacgcgattttagt
gaccatcttgctcttgtccgagcatatgagggttggagggatgctgaaagagacctagct
ggatatgagtactgctggaagaattttctgtctgcacagtctatgaaagctattgattct
cttcgcagggagttttactctttgctgaacgatactggtcttgttgacagcaacattacc
atgtatagttcttggagttatgatgagcatctccttcgagcgatcatctgctatgggttg
tatcctggaatctgttctgtacagcataatgaaaagtcattttcattgaaaacaatggaa
gatggtcaggtgcttttacactcgaactctgttaatgcccgggactccaggataccatat
ccttggctggttttcaatgaaaagatcaaagtaaactctgtctttctccgggattctaca
gctatctccgactcagtgctgcttctgtttggaggaaccatctcaaaaggggaagtggac
ggtcacttgaaaatgttgggtggatacttagagttctttatgaaccctactatagcagaa
atgtacagaagtctaagaagagagcttgatgagttaattcacactaaactcctgaatcct
aggatggatgtacatagttatcatgaacttctgtcagcaatacggttgcttatctcagag
gatcattgcggtggcagattcgtttttaatcatcagattttacttccttccaagccatgt
gctggagcaccaccacccgctccaacgtcaaggatagaaagtggtccgggaggtgacaat
gctaagtctcagctacagacgttgctgaatcgagcaggatatgcaacaccaacctacaag
tcattgcaacttaataacaatcagttccgagcaactgtggagttcaacggaatgcagata
atgggacgaccttgcaacaacaaaaagcaagctgaaaaagatgcagcagctgaggctctg
aactggttgttggaagggcaccttgcaggtcctgattacattgagcagatgtctcagttt
ctgaaaaagagcaaaaaagcataa
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