Solanum dulcamara (climbing nightshade): 129870222
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Entry
129870222 CDS
T09577
Name
(RefSeq) zinc finger CCCH domain-containing protein 16 isoform X1
KO
K14321
nucleoporin-like protein 2
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
129870222
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129870222
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
129870222
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf-CCCH_4
zf_CCCH_4
zf-CCCH_DUS3L
zf-CCCH_2
Torus
zf-CCCH_PARP12
zf-CCCH_10
Motif
Other DBs
NCBI-GeneID:
129870222
NCBI-ProteinID:
XP_055800885
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All DBs
Position
10:880628..887401
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AA seq
462 aa
AA seq
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MPPRKELCRNFMRGSCQYGERCKFLHAAQQQTKPNPFGFGSQSTNFQSTNMPQTKPNPFG
FGVQSNSQPRGSNDMGLKQSQYKPFENKWTRSTSTNSSSLRHSDNQPVAPNHTCTDAESC
RSQIVEDFNNEKPLWLLTCYGHRKNGPCDITGDVSYEELRAAAYDAKHGQSLMSIVERER
RLVNSKVAEFENLLQNPYASTSTSAPNAQSPFPGATPSASLSVQSPFPGAAPSASLSAQS
PFPGAAPSASLSAQSPFPGATPSASLSAQSPFPGAAPSASLSAQSPFPGAAPNVSMSAQS
SFPPSASSFSQLGVMLNTGTSTPPTITFGQPNLPGNSFKMSNSSGTSAFSSGNTSAAGSF
GFGTQVPTQPYQNPSTPSNISASSGRNLFSTSMTSPHFANPSGGQLPTPSQGLFSVTASP
VSINLTNTASTEDFSGDNSIWTKKEWKIGEIPEEAPPDRYVF
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgcccccaaggaaagaactctgcaggaattttatgcggggcagttgtcaatatggtgaa
cgttgtaaatttcttcatgctgcccaacaacaaacgaagccaaatccatttggatttggc
agccaatccactaatttccagagtacaaatatgccacaaacaaagcccaacccttttggt
tttggtgttcagagtaactcccagccaagagggtccaatgatatggggctcaaacagagt
caatacaagccttttgaaaacaagtggactcgttctacaagtaccaacagttcttcattg
cggcattctgacaatcagcctgtagcacctaatcacacctgcacagatgctgagtcatgc
agaagtcaaattgtggaagattttaacaatgagaaaccattgtggcttcttacctgctat
ggtcatcgtaaaaatggtccatgtgatattaccggtgatgttagctatgaagagctgcga
gcagcagcatatgatgcgaaacatggacagagcttgatgtctattgttgagagagagagg
agactggttaattctaaagtagctgaatttgaaaatctattgcaaaatccttatgcatct
acatcgacttctgctcctaatgctcaaagtccttttcctggtgccacaccaagtgcctca
ttgagtgttcaaagtccttttcctggtgctgcaccaagtgcctcattgagtgctcaaagt
ccttttcctggtgccgcaccaagtgcctcgttgagtgctcaaagtccttttcctggtgcc
acaccaagtgcctcattgagtgctcaaagtccttttcctggtgccgcaccaagtgcctca
ttgagtgctcaaagtccttttcctggtgccgcaccaaatgtctcgatgagtgctcaaagc
agttttcctccttcagcctcaagttttagtcagttgggagtcatgctgaatacagggact
tcaactccaccaactattacatttgggcaacccaatctccctgggaactcttttaagatg
tcaaattcgtctgggacgagtgctttttcatctgggaatacatcagcagcaggttccttt
ggcttcggaacccaagtccctacccagccgtatcaaaatccttccactcccagcaatatt
tccgcaagttctgggaggaacttattttccacctcaatgacttcaccacattttgctaat
ccctctggtggccaacttcctactccttctcaggggcttttttctgttacggcgtcccct
gtcagtatcaacttgacgaatactgcatcaacagaggacttcagcggggataacagcatt
tggacaaagaaggaatggaaaattggggagattccagaagaagcgcccccagacagatat
gttttctag
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