Solanum dulcamara (climbing nightshade): 129870275
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Entry
129870275 CDS
T09577
Name
(RefSeq) uncharacterized protein LOC129870275 isoform X1
KO
K14794
ribosomal RNA-processing protein 12
Organism
sdul
Solanum dulcamara (climbing nightshade)
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sdul03009
]
129870275
Ribosome biogenesis [BR:
sdul03009
]
Eukaryotic type
90S particles
Other 90S particles
129870275
Pre-60S particles
Other pre-60S particles
129870275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT_RRP12_N
RRP12_HEAT
HEAT_GCN1
TOR1L1_N
HEAT_Maestro
HEAT_EF3_N
DUF3730
SAMP
Motif
Other DBs
NCBI-GeneID:
129870275
NCBI-ProteinID:
XP_055800972
LinkDB
All DBs
Position
10:73131385..73147291
Genome browser
AA seq
1171 aa
AA seq
DB search
MDSQENNNVFNDNSDICQQLLQRYSKSSAPQHHHLCAIAAATRSIIQSESLPITPFSYFV
ATISTISNSQDSLDPQALSGLSSFLSIVLPLVHHDGVSSDKSTEAIGVLVGVLEKETVDS
EGGLGTSTVRAFVKCLGILIGFCDKEDWDSVKVGFEILVKFSIDKRPKVRKCAHDCILTV
FKSFGSSSVAKKAGERIYSLIKGNIALAMKLSAPKEISGSKDEHQEVLHSLNILKPIIPY
LRVKDNEKVLAQLVELMRSQSSAFTRHIFGIIGAILDASKVEIILLEADTIIKALISYML
SEETPADNVLFAATLAKGIIDKLHDGGMSAWVTYLPLVVSSISGLLTRPENIALPASNIL
KEMINDHIDGKKFLTGKKQAVDDEALSCSEFEAMKAICLIFENMLLSSSGYPNDHILAIL
SVMFLKLGEVLDFCAKGIILKLADWMIVASGDAAYDAKNLQECIGSAVIAMGPEKLLALL
PVSLNMKDYSFSNSWLIPVLNKYICGSSLGFFMKHVVPLAVSFEQASSKVKKSVIREELL
AYARECWGLLPAFCRCPSDVHKNAQALTTLLIPFLKEDSFMLENISAALQELVNKNKNVL
ASDNFSGEPIVHQTENENLDLALEFKRKCSYSKKSASKNIKALASCSEEWLQALINIIFE
SSPANYQQFKEAIECLTAITDSSLTQRIFTSSMVRAGITNDICEYKKLGLYSTDNKENNS
TLLVEVAKRCMILELGSCFVEGSGEDLIKVLFAIARDVLETTHGAGHLEAYHILNRILEK
HSWFHSSHAEQLMDLLASVKPPTDTNSLTSRFACYKTLLIDALQGNDEENTQAFVILNEI
ILALKDSTEEGRKTAYDALIGVCSSLRDCSSAKSNDSYKKFVDMIIAYLSGSSPHIKSGA
VSALSVLVYSDANICLSVPDLVPSVLTLLQSKDVEVTKAVLGFVKVFVSSIQAKDLHNLL
SDIVNGVLPWSSVSRHHFKSKVTVIVEILMRKCGVAAVKSVAVEKYKNFLKTVSENRHGK
SSSREDGSAETESTPSDSRQHKRKDRDSSNSLNEKDFKEPHKRKKRKEDEKDSSNFAKER
IMGGKTRKNEMKRKNNSTTDEPYRKLVNKTREFGRRKQEGNKAPSQKRDNRGKLKRGGFP
GKGKIDKQKRPADGVRGSGVNRRQRTNKNSL
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atggattctcaagagaacaacaatgtcttcaatgacaattccgacatatgccaacaactc
ctccaacgttacagcaaatcctcagcacctcaacatcatcatctctgtgctattgcagcc
gccactcgttccattatacaatctgagtcattaccaataacccctttttcttacttcgtc
gccacaatttcaacaatttcaaattctcaagattctcttgacccacaagctttatctggg
ttgtcttcatttttgtctattgttcttcctttagttcatcacgatggtgtttcttcagat
aaaagtactgaggcaattggggtccttgtgggtgttcttgaaaaggagacagtggacagt
gagggtggtttggggacttctactgtgagggcttttgttaagtgtttggggattttaatt
gggttttgtgataaagaagattgggattctgtgaaagtggggtttgagatacttgtgaag
ttctccattgataagcgtccaaaggtgaggaaatgtgctcacgattgtattctgactgtt
ttcaagtcatttggttcatcttctgtggctaagaaggctggtgaaagaatttactccttg
attaaaggtaacattgcattggcaatgaaactaagtgctccaaaggaaataagtggatct
aaagatgagcatcaagaggtacttcactctctgaatatcctgaagcctatcatcccgtac
cttagagtcaaagacaatgagaaggtacttgctcaactagtggagcttatgaggtcccag
agctcagcattcacaagacacatttttggtattattggggcgatattagatgcttcaaag
gttgaaatcattcttctagaagctgacactattataaaagcccttatatcatacatgttg
tctgaggagacccctgctgacaatgtattgtttgccgcaactttagcaaaaggtatcatt
gacaaactccatgatggtggaatgagtgcttgggtcacctatttgcctttggttgttagc
tccatatcaggtcttcttacacgtccagaaaatattgctttaccagcttcaaatattttg
aaagaaatgattaatgatcatattgatgggaaaaagtttttgactggtaaaaagcaggca
gtggatgatgaagctctcagttgttctgaatttgaagcaatgaaagctatttgtttaatc
tttgaaaacatgcttctcagctcttctggatacccaaacgaccatatattggcaatcctg
tctgttatgttccttaaattgggtgaggtcttggacttctgtgcgaagggtataatactt
aaacttgctgattggatgattgttgcttctggggatgctgcttatgatgcaaaaaatctt
caggagtgcatagggtcagctgtcattgctatgggaccagagaaactgcttgccctgtta
cccgtctcccttaatatgaaggattactctttttcaaacagttggttgattcctgtttta
aataaatatatatgtggatcatcacttggtttctttatgaagcacgtggtgccacttgct
gtgtccttcgaacaggcatcatctaaagttaaaaagtcagtaattcgagaagaactgctg
gcttatgcccgtgagtgttggggactattacctgccttttgtcgctgtccatctgacgtc
cacaagaatgcccaagctttgactacactattgattccttttctaaaggaggactccttt
atgcttgagaatatttctgcagctttgcaggaactggtgaataagaataaaaatgtactt
gcatctgataacttttctggagagcctatagtacaccaaacggagaatgaaaatcttgat
ttggcattggagttcaaacgcaaatgctcttactcaaagaagtctgctagcaaaaatatt
aaggctttggcatcttgctctgaggaatggctccaggctttaataaatattatttttgag
tcatctcctgcaaattaccaacagttcaaggaggcaatagagtgcttgacggccatcact
gattcttcgttaacccaaaggatctttacttcttcaatggtgagagctgggattacaaat
gatatttgtgaatacaagaagcttggactttattcaacagacaataaagaaaataactcc
actcttcttgtggaagtagctaagaggtgcatgatcttggagttgggatcgtgcttcgtt
gaaggatctggcgaggatctcattaaagtcctctttgctattgctagggatgttttggag
actactcatggagctggtcatcttgaagcatatcacattctaaatagaatattagagaaa
cattcctggtttcactcttcacatgctgagcagctgatggatttgttagctagtgtgaag
cctccaactgatacaaattcacttacgagtcgctttgcctgctacaaaaccttgttgatt
gatgcattacagggtaatgacgaggaaaacacccaggcctttgtcattctgaatgagatt
attctcgcattaaaagattccacagaagaaggtagaaagacagcgtatgatgcccttatc
ggagtgtgttctagcttgagagactgttcatctgctaagtcgaatgattcttataagaag
ttcgttgatatgattatagcttacctttctggttcatcaccgcatataaaaagtggagca
gtctctgcactttctgttctggtctatagtgatgccaatatctgtctctcagtccctgat
ctggtcccttccgttctgactctgctgcagagtaaagatgtcgaagttacaaaagctgtt
ctgggatttgttaaagtatttgtatctagtattcaagcaaaggacctgcataatttgctc
tcagacattgtgaacggagtgctaccttggtcatctgtgtcgcgccatcattttaaatca
aaggtcaccgtcatcgtggagatcttgatgagaaagtgtggagttgctgcagtcaagtca
gttgcagtcgagaagtacaaaaatttcctcaagacagtctcagagaatcgccatggcaag
tcaagctctagagaagatggtagtgctgagacggaatcaactccttcggattcaaggcag
cataaaaggaaggatagagactctagtaattctctcaatgaaaaagatttcaaggaacct
cacaaaaggaagaagagaaaggaggatgaaaaagattcatctaattttgccaaggaacgt
atcatgggaggtaaaacaaggaaaaatgaaatgaaaaggaagaacaacagcactaccgat
gaaccttataggaagctggttaacaaaacaagagaatttggtcgtcgcaaacaggaaggt
aataaagcaccatctcagaagagagataacagaggcaaattgaagagggggggtttccca
ggaaagggaaagatagataagcaaaaaaggccagctgatggtgtacggggttcaggtgtt
aatagacgacagagaactaacaaaaacagcttgtaa
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