Solanum dulcamara (climbing nightshade): 129870346
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Entry
129870346 CDS
T09577
Name
(RefSeq) protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1
KO
K11661
helicase SRCAP/SWR1 [EC:5.6.2.-]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
129870346
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sdul03036
]
129870346
Chromosome and associated proteins [BR:
sdul03036
]
Eukaryotic type
Chromatin remodeling factors
SRCAP complex
129870346
SWR1 complex
129870346
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HSA
ResIII
DEAD
Myb_DNA-bind_6
Cas3-like_C
Motif
Other DBs
NCBI-GeneID:
129870346
NCBI-ProteinID:
XP_055801077
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All DBs
Position
10:complement(38789997..38838044)
Genome browser
AA seq
2054 aa
AA seq
DB search
MYKPESWCIYLEIIMASKGYKCKPDHETRVRRQKGLEAPKEPQRPKTHWDHVLEEMVWLS
KDFESERKWKLTQAKKVAIRASKGMLDQATRGQKRVKEEEQRLRKVALNISKDIKKFWLK
IEKLVLYKHQLELDEKKKKALDKQLEFLLGQTERYSTMLAENLVSSPSTCKRTNSLPAPE
AFRIQCIEGSEGDVTNRDCVGENLQPLSTGSDIDDDFGVRSEDEMEDDEHTIEEDEAVIT
KEEREEELAALQNEMDLPLEELLKRYAVGEASRDCGPEKNGADVTVSSGKGRDKCRDVDV
ATETDKSCSPAISGRRSVESNGVVSVPNNYCSDVGKDKLRSPRKKYQEFDKVKLLSDFND
EQDDDDYVLAVGEDKGYNMDDETTLSEEEELAKAETNDAADEIALLQKESELPLDELLAR
YKEDSDTDENVGDDSESYASASDDLLESPAHNECEPNQVNDGQCDVLPTTVTEKEEKEVE
SVDKTGEERQSEDIIADAAAAARSAQPTGSTFSTTKVRTKFPFLLKFPLREYQHIGLDWL
VTMYEKKLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLRW
CPAFKILTYFGSAKERKIKRQGWLKPNSFHICITTYRLVIQDSKVFKRKKWKYLILDEAH
LIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHLEFKDWFCN
PISGMVEGQEKVNKEVVDRLHNVLRPFILRRLKRDVEKQLPSKHEHVIYCKLSRRQRNLY
EDFIASSETQATLASSNFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMSGIDMHLSSSI
CSMLSPGIFSTVNLGALGLLFTHHDFSMTSWESNDVQSIATPSSLIEGRVSLIHGEETSQ
GLKRNKKFHGTNIFEEIQKALAEERLREAKERAAAIAWWNSIKCKQKPVYSTSLREIVTV
KHPVHGMYCQKNNPLSFLHSAWLAESILLPVERFQQMVDQVETFMFAIPAARSPAPACWC
SKPGTSVFFSPTFKETCSEVLSPLLTPFRPAIVRRQVYFPDRRLIQFDCGKLQELAGLLR
RLKSEGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTPPEERQTLMQRFNTNPKIFL
FILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIE
ENILKKANQKRALDDLVIQSGSYNTEFFKKLDPMELFSGHRTVSLKNIEVEKNSNVTELQ
LSNADVEAALQNVEDEADYMALKKVEEEEAVDNQEFTEEAIVRLEDDELGNDDETKADEP
ADHEALVTTSSKELVATSNVSNPLKEQAVTFAGKEDDIDMLADVKQMAAAAAAAGQAILS
FESQLRPIDRYAVRFLELWDPIIDKTAIESQGHFEETEWELDRIEKLKEDMEAEIDDDEE
PLVYERWDADFATEVYRQQVETLAQHQLMEEREAEAKEKELAEYENSMGHTSSVPKTKSK
KKAKKTKFKSLKKGGLASERQALKEESSMELMPMDDDILSSDPVTTPDSAQERKRKLARY
DDDVKGAKKSKKLKNSSEVSSLVIHSTYHGKRQVESKELKQYDVGTMNIDLRPINRSKMG
GKILISPMPVKRVLTIKSERPIRKGKTWSKDYFPSADSWLQQEDAVLCASVYEYGPHWSL
VSDILYGMTAGGVYRGRYRHPLHCCERFRELIQRYVLSAADNVNDRSNNTGSIKGLLKVT
EENVRLVLDIASEIPDHEPLVQKHFFVLLSSVWKMRKNLTNTFSSSQNGFFHSGNLFTPI
TNRVSTNYSMGPPVKRFSNSSVCAKLVAVALADQQSAQSDERVPICDQREEASFPAEHLD
ITLEFGAEKDDETIPLLDPVTVKILGPGSPSFPRMTIAEHHHFKSSKIMAENRFWAASSS
EGCLDWASLAFPIGDAKSHTPLKLQFLGKHKPSDSVKVSKSKSRKILTESSDVGWTKDLV
LPPMPSVSDDSCPRDDVGLSFLAESGNGFEDRALLDLNPVFNAGSEDVLTHEYVPEFISG
LDDWSVFPEFTDIG
NT seq
6165 nt
NT seq
+upstream
nt +downstream
nt
atgtataagccggaatcatggtgtatatatcttgagattatcatggcttctaaagggtat
aagtgtaagccggaccatgaaacacgtgtccgacgccaaaagggtcttgaagcacctaaa
gaacctcaacgacctaaaacacactgggatcatgttcttgaggagatggtctggttgtcg
aaggactttgaatcagagaggaaatggaagttgactcaagcaaagaaggttgctatacga
gctagcaagggaatgcttgatcaggctacacggggacaaaagcgagttaaggaagaagag
caacgtctgcgtaaagttgcactcaatatctcaaaggacatcaaaaaattttggttgaaa
atagagaagctggttctttacaagcatcagttggagctagacgagaagaagaagaaagca
cttgataagcagctagagtttcttcttggacaaacagaaaggtactcaacaatgcttgca
gagaatcttgtaagttcaccaagtacttgcaaacgaaccaattctttgcctgctccagaa
gcatttagaatccagtgtatagaagggagtgaaggggatgtaacaaatcgtgactgtgtt
ggagaaaatcttcaacctctttcaactggtagtgatattgatgacgattttggcgtgcga
tctgaagacgaaatggaagatgacgagcatactattgaagaagatgaggctgttataact
aaagaagaaagggaagaagagttagctgctttacaaaatgaaatggatctacctcttgaa
gagctccttaagcgttatgcagttggggaagctagcagagattgtggccctgagaagaat
ggtgcagatgttacagtcagttctggcaaaggcagggataaatgtagagacgttgatgtt
gctactgagaccgacaaaagttgttcacctgcaatttctggtcgtcgttctgttgaaagt
aatggcgtcgtatcagttccaaataattattgttctgacgtagggaaagacaagctaaga
agtcctcggaagaagtatcaggagttcgacaaagttaagttgttgagtgactttaatgat
gaacaggatgatgatgattatgtccttgctgttggtgaagataaaggatacaatatggat
gatgaaacaactttgtcagaggaggaggagttggcaaaggcagagacaaatgacgctgca
gatgagattgcgctgttgcaaaaggagagcgaacttcctttagatgagctccttgctagg
tataaagaggattctgatactgatgaaaatgtcggggatgattctgaatcatatgcgtct
gcttctgatgatctcctggaatcaccagcacacaatgaatgtgaacccaatcaagtaaat
gatggacagtgtgatgtactgcccactacagtcactgagaaggaagaaaaggaagttgaa
agtgtggataaaacaggggaagagaggcagagtgaggatataattgctgatgcagcagct
gctgccagatcagcacaaccaacgggtagcaccttctcaacaaccaaagtgcggactaag
ttcccgttccttctaaaatttccccttcgtgagtatcaacatattggtttggattggctt
gtgaccatgtatgagaagaaacttaatggaatcctagcagatgaaatgggtttggggaag
actatcatgacaattgctcttcttgctcacctagcatgtgaaaaaggaatatggggccct
catcttattgttgtcccaactagtgtcatgctaaactgggagacagagtttcttagatgg
tgtcctgctttcaaaatcttgacatattttggcagtgctaaagagcgaaagattaaaagg
caaggctggttgaagccaaactcatttcatatatgtatcacaacttacagactcgttata
caagactccaaagttttcaagcgtaagaagtggaaatatctgattttagatgaagctcat
ctaataaagaattggaaatcacaaagatggcagacacttctcaattttaactcaaaacgg
cgtatacttttgactggtacaccattgcagaatgatctcatggagctgtggtctctaatg
catttcttgatgcctcatatttttcagtctcatctagaattcaaagattggttctgtaat
cctatttctggaatggttgagggacaagaaaaggttaataaggaagttgttgatcgcttg
cataatgtccttcgtccctttattctccgtcgtttgaaaagggatgtggagaagcagctt
ccttcaaaacatgagcacgtaatttattgtaagctctcaaggaggcagcgtaacttgtat
gaagactttattgctagttcggagacacaagccactctagctagttcaaatttttttggg
atgataagtgtaataatgcaacttcgcaaagtgtgcaatcatcctgacttatttgaagga
cgtccaatagtgagctcctttgatatgagtggtattgatatgcacttgagctcttccatt
tgctcgatgctttcgcctggtatattttcaactgtcaaccttggtgctttggggttgttg
tttacacatcatgatttttcaatgacgtcttgggagagtaatgatgttcaatccattgct
accccatcaagcttgattgagggtcgtgtgtctctgattcatggtgaagaaacttcacaa
ggacttaaacggaataagaagtttcatggaacaaacatatttgaagagatccaaaaggca
cttgctgaggagagactgagagaagcaaaagagagagcagcagctattgcatggtggaat
tccataaagtgtaagcagaaacctgtatattctacaagtcttcgggagattgttactgta
aaacatccagtccatggcatgtactgtcaaaaaaataatcccttgtcattcttgcactcc
gcttggcttgcggaatcaatactgttaccagttgagagattccaacaaatggttgatcag
gttgagactttcatgtttgcaatccctgctgcacgttccccagcacctgcttgctggtgc
agtaaaccaggaacttccgtatttttcagtccaacctttaaggagacatgttcagaggtt
ctttctcctcttctcactccttttcgtccagccattgttagaaggcaagtctactttcca
gataggcggcttatacaatttgactgtggcaagctgcaggagcttgcaggtttattgagg
cgattaaaatcagaaggtcaccgtgcattaattttcacccaaatgacaaagatgcttgat
gttttagaagctttcattaatttgtatggttacacttacatgcgtctggatggttctact
ccgccagaagagagacaaactttgatgcaacgtttcaacacgaatccaaagattttcctt
tttattttatcaacccgtagtggtggagttggcatcaacttggtgggtgcagacacagtc
atcttttatgatagtgactggaacccagctatggatcaacaagctcaagatcgttgtcat
agaataggccagacccgtgaagtacacatttatcgattgataagtgagagcaccattgaa
gagaatattttgaaaaaagcaaaccagaagcgtgctctggatgatttggttatacaaagt
ggaagttacaacacagaattcttcaagaaactggatccaatggaattgttctccgggcac
agaacagtttccttaaagaatattgaagtagagaagaatagcaatgtcactgagcttcag
ctttctaatgctgacgtggaggctgctctgcaaaatgtagaagatgaggcagattacatg
gctctgaagaaagttgaagaggaagaggcagtagacaatcaagagttcactgaagaagca
attgtcaggttggaagatgatgaacttggtaatgatgatgagacgaaggctgatgagcct
gctgatcatgaagccctagttacaacatcaagtaaagagcttgtggcaacgtcaaatgtt
agcaatccactaaaagaacaagcagttacttttgctggtaaagaagatgacattgacatg
ctggccgatgtcaaacagatggcagcagcagcagctgctgccggacaagctatcttgtct
ttcgagagtcagctacggccaattgatcggtatgctgtacgttttctggagttatgggac
cctataatagacaagacagctatcgagtcacaaggtcattttgaagaaacagaatgggaa
ttggatagaattgaaaagttgaaggaagatatggaagcagagattgatgatgatgaagag
cctttagtttatgagagatgggatgctgattttgcaactgaggtatacagacagcaggtt
gagactttggctcagcatcagttgatggaggagcgggaagctgaagccaaagagaaagag
cttgcggaatatgagaactccatggggcatacatcttctgttccaaaaaccaagtcaaag
aagaaggcgaagaaaacaaagttcaaatctttgaaaaaaggaggtctagcttctgaacgt
caagctttgaaggaagagtcgtcgatggagttgatgcctatggatgatgatattctatcc
agtgatccagttacgacgccggattctgctcaagagagaaagcgtaaactagcaagatat
gatgatgatgttaaaggcgccaagaagtctaaaaaactgaagaattcctctgaggtatct
tctctggtaatacattcaacatatcatggaaagaggcaggttgaatctaaagaattgaag
cagtatgatgttggcacgatgaacatcgatctcagaccaataaacagaagcaagatggga
gggaaaatcttaatcagtccaatgcctgtaaaacgtgttcttactattaaatctgaaagg
ccgattaggaaaggcaaaacatggtctaaagattattttccatcagctgattcatggttg
caacaagaagatgctgtactttgtgcttctgtttatgagtatggtcctcactggagcttg
gtgagtgatatcttgtatggaatgactgctggtggagtttatagaggaagatatcgtcac
cctcttcattgttgtgagaggtttagggaactcatacagagatatgtgttatctgctgca
gacaatgtaaatgatagatccaacaatactggctctataaaaggtcttctcaaagtgact
gaggaaaatgtccgactggtgttggatatcgcatcagagatcccagatcatgagccgctt
gttcaaaagcatttctttgtccttctttcctctgtgtggaaaatgcggaaaaaccttaca
aatacgttctcatcttcccagaatggattctttcattctggaaatttatttacaccaatt
acgaaccgtgtttcgacgaattactcaatgggtccacctgtaaagagattttctaattca
agtgtttgcgccaagttagtagcagttgctcttgctgaccagcagagtgcacaaagtgat
gagagagtccccatctgtgaccagagagaagaagcttcttttcctgctgagcatttggat
atcacactggaatttggggcagagaaagatgatgagacaattcccctgctagatcctgta
actgtcaaaatacttggtcctggatctccatcgtttccaagaatgacaatagctgagcat
catcatttcaagtcttccaagattatggctgaaaaccgattctgggctgcatcaagtagt
gaaggttgtttagattgggcttcccttgcttttcctattggggatgccaaatcacatact
ccgttgaaattgcaatttttggggaagcataagccctctgattcggtgaaggtatcgaaa
tctaagtccagaaagattttaacagaatctagtgacgttggttggaccaaggatctagtg
ttgccaccaatgccatctgtgtctgatgattcctgtccaagagatgatgtgggattatca
ttccttgcagaaagtggaaatggttttgaagatagggccctgttagacctaaatccggta
tttaatgcagggagtgaggatgtactcacacatgaatatgttccggaatttatatcggga
cttgatgattggtcagtgtttccagagttcacagatatcggatag
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integrated database retrieval system
