Solanum dulcamara (climbing nightshade): 129870394
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Entry
129870394 CDS
T09577
Name
(RefSeq) zinc finger CCCH domain-containing protein 49-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129870394
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sdul03041
]
129870394
Spliceosome [BR:
sdul03041
]
Complex B
Other components
Prp19-related factors
129870394
Complex C
129870394
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
RRM_YTH1
RRM_occluded
zf-CCCH_10
RRM_3
zf-CCCH_12
zf-CCCH_3
zf-CCCH
zf-CCCH_4
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
129870394
NCBI-ProteinID:
XP_055801142
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All DBs
Position
10:73828362..73832494
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AA seq
482 aa
AA seq
DB search
MAHRLLRDAEADGWERSDFPIICESCLGDSPYVRMTKADYDKECKICTRPFTVFRWRPGR
DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE
EHDRRARAGIDYESSYGKVRANDTILKLQRTTPYYKRNRAHVCSFYIRGQCTRGLECPYR
HEMPETGELSQQNIKDRYYGVNDPVAMKLLNKAGEMPSLEPPDDASIRTLYVGGVDARIS
EQDLRDQFYAHGEIESIKMVSQRGCAFVTYTTREGAEKAAEELVNKLVIKGLRLKLLWGR
PQAPKPETELSDEVRQQAAVTHSGLLPRAVISQQQNQLPPPPGTQEQPPQPMPYFNIPPM
PQQERAYYPSMDPQRMGAVVPSQDGASSSAAGSGPENKIGSEKHPQGQHYAYPPVPPPQG
QFYSPYYPPPPYGYMPPPPPPPHYQQYPPPFQAARPPPPPPAGEQAAYQQKPQPAGAAAQ
QP
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggcgcatagattgcttagagatgcagaagcagatggatgggaacgatctgattttccg
attatatgtgagtcttgtctcggcgatagtccttatgtgcggatgacgaaagcagattat
gacaaggagtgcaagatatgcacacgacccttcacagtgttcagatggaggcctggtcgg
gatgcaagatacaaaaaatctgagatctgtcagacctgcagcaagttgaagaatgtttgt
caagtttgtcttttggatcttgagtatggtttgcctgttcaggtccgagacactgctctc
agtatcaattctaatgatgcaattcccaagagtgacgtgaatagagaatatttcgcagag
gagcatgaccgcagggcaagagcagggattgattatgaatcttcatatgggaaagtccgt
gcaaatgacactattttgaagctccaaagaacaactccatactacaagagaaatcgggca
catgtttgcagtttctatatacgtggtcaatgcacacggggtttggagtgcccttatagg
catgagatgccagagactggggagttgtcacaacaaaacatcaaggaccgttactatgga
gttaatgatcctgtggcgatgaagctacttaataaggcaggtgaaatgccttcactggag
ccccctgatgacgcgagcattagaaccctctatgtgggtggtgttgatgcaagaatcagt
gagcaggaccttagggaccagttttacgcacatggagaaatcgaatctattaaaatggtg
tcgcagcgtggttgtgcttttgtaacctacactacaagagaaggtgcagagaaggcggct
gaggaactagtgaacaagctagtgataaaaggcttgagactgaagctgctctgggggaga
ccccaagctcctaaaccagagaccgagctctcggatgaagtaaggcagcaggctgcagtg
actcacagtggattgttgcccagagctgtcatatcacaacagcagaatcagcttccccca
cccccaggcactcaggaacaacccccacaaccgatgccatacttcaacattccgccaatg
cctcagcaggaaagagcatattatccgtcaatggatcctcaaaggatgggtgccgtagtt
ccatctcaggatggagcttctagttcagctgcagggtcagggcctgaaaacaagattggt
tccgagaaacacccacaaggacaacactatgcatatccaccggtgcctccacctcaagga
caattttactcgccttactatccaccaccaccctatgggtatatgccgccaccaccaccg
cctccccattatcaacagtatcccccgccttttcaagctgccagaccacctcccccacct
cctgctggtgagcaagctgcttatcagcagaagcctcaaccagcaggagctgcggcacaa
caaccttaa
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