KEGG   Solanum dulcamara (climbing nightshade): 129870768
Entry
129870768         CDS       T09577                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
sdul  Solanum dulcamara (climbing nightshade)
Pathway
sdul03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sdul00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    129870768
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:sdul03041]
    129870768
Spliceosome [BR:sdul03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    129870768
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 EIF3I Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_EML Beta-prop_IFT122_1st Beta-prop_TEP1_C NBCH_WD40 WDR90_beta-prop_4th ANAPC4_WD40 PRP4 Beta-prop_WDR19_1st Beta-prop_Vps41 WD40_RFWD3 Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_DCAF4 WD_LRWD1 Beta-prop_SCAP eIF2A Nbas_N Beta-prop_SPT8 WD40_like
Other DBs
NCBI-GeneID: 129870768
NCBI-ProteinID: XP_055801605
LinkDB
Position
10:73733372..73737969
AA seq 579 aa
MDAMDAEDEVPVSTTEPSTLVDDNSTVGNAIGAVNLQTVPPVTPPVVPTVILPPVVPAIA
PRPAVPTSILPPLAPLPVRPPVLRPPVAQNGEMQVSDSDSDLEEMGSGRGAGGSTQEYEI
SEESRIVRERQEKALQELLMKRRAAALAVPTNDMAVRARLRRLGEPITLFGEREMERRDR
LRMLMARLDAEGQLEKLMKAHEDEEAASAAPAEEEDIQYPFYTEGSKALLDARVEIAKYS
LVKSALRLHRARRKRDDPDEDVDAEVDWALKQAGSLALDCSEMGDDRPLFGCSLSHDGKM
LATCSLSGIAKIWSMPQVQKVSTLKGHTERATDVVFSPTSNYLATASADKTARLWNSEGS
LLRTFEGHLDRLARIAFHPSGKYLGTASFDKTWRLWNVESGEELLLQEGHSRSVYGLSFH
HDGSLVASCGLDALVRVWDLRTGRSILALEGHVKPVLGVSFSPNGYHLASGGEDNTCRIW
DLRQRRSSYIIPAHSNLISQVKFEPQEGYFLATASYDMTAKVWSPRDFKPVKTLSGHEAK
IMSLDVAADGQFITTVSYDRTIKLWSSKNIEKEEKMDID
NT seq 1740 nt   +upstreamnt  +downstreamnt
atggatgctatggatgctgaggatgaagttcctgtttcaactacagaaccttcgactcta
gttgatgataattcaactgtgggtaatgctataggtgcagttaatcttcaaacagtccca
cctgttactccaccagttgttccaacggttatccttcctcctgttgttcctgcaattgct
ccaaggcctgcagttcccacctctattcttcccccattagctccattgcctgttcgccca
cctgtccttaggcctccggtagcacagaatggagaaatgcaagtgagtgattcagattca
gaccttgaagaaatgggatccggtcgtggtgctgggggatccactcaagaatatgagatc
tccgaggagagtagaattgtccgagagaggcaggaaaaggccctgcaggagcttctcatg
aagagacgtgctgctgcattagcagttcctacaaatgatatggccgttcgagctcgactt
cgaaggcttggcgaacccataactctctttggagaaagggagatggaaagaagggatcga
ctgcggatgcttatggcaaggcttgatgcagaggggcagctggaaaagctgatgaaagct
catgaggatgaagaagcagcttctgctgcaccagcagaggaggaggatattcaataccct
ttttacacagaaggatcaaaagcacttttagatgctagggtagaaatcgcaaagtattct
ttagttaagtcagctttacgtctccatcgcgcaaggaggaaaagagatgatccagatgaa
gatgttgatgcagaggttgattgggctttaaagcaagcagggagcctggcccttgattgt
agtgaaatgggagacgatcgacccctttttggatgctcgctttcacatgatggaaagatg
cttgcgacctgttctctgagtggaatagcaaagatatggagtatgcctcaagtgcaaaag
gtttccactctgaaaggtcacactgaacgagctactgatgttgtgttctctccaacaagc
aattatttagctactgcatctgctgacaagaccgcaaggttatggaactcagaaggttct
ctcctcagaacgttcgagggacatttggaccgtctagctcggattgcttttcatccttcc
ggaaaatacttgggcacagctagctttgacaaaacttggagattatggaatgtggagagt
ggtgaagagctgcttttgcaagaaggtcacagtaggagtgtttatggattgtcttttcac
catgacggttcattagtggcatcatgcgggttggatgcacttgttcgagtgtgggattta
aggactggacgaagtattcttgctctagaaggccatgttaaaccggttcttggtgtcagt
ttttctccgaatggttatcatttggctagtggtggtgaagataatacctgtcgtatttgg
gacttaaggcagagaagatcttcttacatcataccagctcactccaatcttatctctcaa
gttaagtttgagcctcaggagggatactttttggctacagcttcctatgatatgactgct
aaggtttggtcaccaagggatttcaagcctgtaaagacactctctggtcatgaagcaaaa
atcatgtcattggatgttgcggcagatgggcaattcatcaccactgtgtcttatgatcga
acaatcaagctatggtcaagcaaaaacattgagaaggaagagaaaatggatatcgactaa

DBGET integrated database retrieval system