Solanum dulcamara (climbing nightshade): 129870768
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Entry
129870768 CDS
T09577
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129870768
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sdul03041
]
129870768
Spliceosome [BR:
sdul03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
129870768
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
NBCH_WD40
WDR90_beta-prop_4th
ANAPC4_WD40
PRP4
Beta-prop_WDR19_1st
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_DCAF4
WD_LRWD1
Beta-prop_SCAP
eIF2A
Nbas_N
Beta-prop_SPT8
WD40_like
Motif
Other DBs
NCBI-GeneID:
129870768
NCBI-ProteinID:
XP_055801605
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Position
10:73733372..73737969
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AA seq
579 aa
AA seq
DB search
MDAMDAEDEVPVSTTEPSTLVDDNSTVGNAIGAVNLQTVPPVTPPVVPTVILPPVVPAIA
PRPAVPTSILPPLAPLPVRPPVLRPPVAQNGEMQVSDSDSDLEEMGSGRGAGGSTQEYEI
SEESRIVRERQEKALQELLMKRRAAALAVPTNDMAVRARLRRLGEPITLFGEREMERRDR
LRMLMARLDAEGQLEKLMKAHEDEEAASAAPAEEEDIQYPFYTEGSKALLDARVEIAKYS
LVKSALRLHRARRKRDDPDEDVDAEVDWALKQAGSLALDCSEMGDDRPLFGCSLSHDGKM
LATCSLSGIAKIWSMPQVQKVSTLKGHTERATDVVFSPTSNYLATASADKTARLWNSEGS
LLRTFEGHLDRLARIAFHPSGKYLGTASFDKTWRLWNVESGEELLLQEGHSRSVYGLSFH
HDGSLVASCGLDALVRVWDLRTGRSILALEGHVKPVLGVSFSPNGYHLASGGEDNTCRIW
DLRQRRSSYIIPAHSNLISQVKFEPQEGYFLATASYDMTAKVWSPRDFKPVKTLSGHEAK
IMSLDVAADGQFITTVSYDRTIKLWSSKNIEKEEKMDID
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atggatgctatggatgctgaggatgaagttcctgtttcaactacagaaccttcgactcta
gttgatgataattcaactgtgggtaatgctataggtgcagttaatcttcaaacagtccca
cctgttactccaccagttgttccaacggttatccttcctcctgttgttcctgcaattgct
ccaaggcctgcagttcccacctctattcttcccccattagctccattgcctgttcgccca
cctgtccttaggcctccggtagcacagaatggagaaatgcaagtgagtgattcagattca
gaccttgaagaaatgggatccggtcgtggtgctgggggatccactcaagaatatgagatc
tccgaggagagtagaattgtccgagagaggcaggaaaaggccctgcaggagcttctcatg
aagagacgtgctgctgcattagcagttcctacaaatgatatggccgttcgagctcgactt
cgaaggcttggcgaacccataactctctttggagaaagggagatggaaagaagggatcga
ctgcggatgcttatggcaaggcttgatgcagaggggcagctggaaaagctgatgaaagct
catgaggatgaagaagcagcttctgctgcaccagcagaggaggaggatattcaataccct
ttttacacagaaggatcaaaagcacttttagatgctagggtagaaatcgcaaagtattct
ttagttaagtcagctttacgtctccatcgcgcaaggaggaaaagagatgatccagatgaa
gatgttgatgcagaggttgattgggctttaaagcaagcagggagcctggcccttgattgt
agtgaaatgggagacgatcgacccctttttggatgctcgctttcacatgatggaaagatg
cttgcgacctgttctctgagtggaatagcaaagatatggagtatgcctcaagtgcaaaag
gtttccactctgaaaggtcacactgaacgagctactgatgttgtgttctctccaacaagc
aattatttagctactgcatctgctgacaagaccgcaaggttatggaactcagaaggttct
ctcctcagaacgttcgagggacatttggaccgtctagctcggattgcttttcatccttcc
ggaaaatacttgggcacagctagctttgacaaaacttggagattatggaatgtggagagt
ggtgaagagctgcttttgcaagaaggtcacagtaggagtgtttatggattgtcttttcac
catgacggttcattagtggcatcatgcgggttggatgcacttgttcgagtgtgggattta
aggactggacgaagtattcttgctctagaaggccatgttaaaccggttcttggtgtcagt
ttttctccgaatggttatcatttggctagtggtggtgaagataatacctgtcgtatttgg
gacttaaggcagagaagatcttcttacatcataccagctcactccaatcttatctctcaa
gttaagtttgagcctcaggagggatactttttggctacagcttcctatgatatgactgct
aaggtttggtcaccaagggatttcaagcctgtaaagacactctctggtcatgaagcaaaa
atcatgtcattggatgttgcggcagatgggcaattcatcaccactgtgtcttatgatcga
acaatcaagctatggtcaagcaaaaacattgagaaggaagagaaaatggatatcgactaa
DBGET
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