KEGG   Solanum dulcamara (climbing nightshade): 129870857
Entry
129870857         CDS       T09577                                 
Name
(RefSeq) uncharacterized protein LOC129870857
  KO
K12857  Prp8 binding protein
Organism
sdul  Solanum dulcamara (climbing nightshade)
Pathway
sdul03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sdul00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    129870857
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:sdul03041]
    129870857
Spliceosome [BR:sdul03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    129870857
 Complex C
   U5 SnRNP specific factors
    129870857
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WD40_WDHD1_1st WDR55 Beta-prop_TEP1_2nd EIF3I WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Beta-prop_EML WD40_MABP1-WDR62_1st Beta-prop_EIPR1 NBCH_WD40 ANAPC4_WD40 Beta-prop_SPT8 WDR90_beta-prop_4th Beta-prop_DCAF4 Beta-prop_IFT122_1st Beta-prop_RIG_2nd WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_SCAP Beta-prop_WDR35_TULP_N eIF2A Beta-prop_WDR19_1st Beta-prop_HPS5 Beta-prop_WDR75_2nd Beta-prop_RIG_1st Beta-prop_DCAF12 Beta-prop_Nup120_160 WD40_like Nbas_N RMC1_N
Other DBs
NCBI-GeneID: 129870857
NCBI-ProteinID: XP_055801707
LinkDB
Position
10:19933935..19941679
AA seq 341 aa
MMQTESALSVMGPRPMELSAVLPSGPQGLGPNGKPRTSSLESPIMLLTGHQSAVYTMKFN
PAGTIIASGSHDKEIFLWNVHGDCKNFMVLKGHKNAVLDVQWTTDGSTIVSASPDKTIRA
WDVETGKQIKKMAEHSSFVNSCCPARRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPDKFQ
ITAVSFSDASDKICTGGIDNDVKLWDLRRCEVTMTLQGHQDTITGMQLSPDGSYLLTNAM
DCTLRIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVWDTT
SRRILYKLPGHTGSVNECVFHPNEPIIGSCSSDKQIYLGEI
NT seq 1026 nt   +upstreamnt  +downstreamnt
atgatgcaaactgaaagtgctttgtcagttatggggccaaggccgatggagttgtctgct
gtgcttcctagcggtccccaaggacttggaccaaatggaaaaccacggacatcaagcttg
gagtcaccaattatgttgcttactggacatcaaagtgcagtatatactatgaagttcaac
ccagcaggaacaatcattgcatctggttcgcatgacaaagaaatctttctttggaatgta
catggtgattgcaaaaattttatggtcttgaaagggcacaaaaatgcagttcttgatgtt
caatggactactgatggatcaacaatagtatcagctagccccgataagactattagggca
tgggacgtagaaacagggaagcaaataaagaaaatggctgaacattcctcatttgttaac
tcatgctgcccagctcggaggggccctcctcttattgtcagcggatctgatgatggcact
gctaaactttgggatatgcgccaaagaggagccattcaaacatttccagacaaatttcaa
attacagccgtcagtttctctgatgcctctgataagatctgcacaggtggtattgacaat
gacgtgaaattgtgggatttacgaaggtgtgaagtaactatgactctccagggccatcag
gatactatcactggtatgcagctgagtcctgatgggtcttatcttcttactaatgcgatg
gactgcacacttcgcatatgggacatgcgcccttatgccccccaaaatcgatgtgttaag
atcctggaaggccaccaacacaattttgaaaagaacttgctgaaatgtagttggtctcct
gatggaagtaaagtaacagctgggagttctgatcgcatggtttatgtctgggatacaaca
tctaggcgcatcctgtataagctccctggacacactggatctgttaatgaatgtgttttt
catcctaatgaaccaatcattggatcttgcagtagtgataaacagatctatcttggtgag
atttga

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