Solanum dulcamara (climbing nightshade): 129871118
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Entry
129871118 CDS
T09577
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2-like
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03020
RNA polymerase
sdul03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
129871118
09124 Replication and repair
03420 Nucleotide excision repair
129871118
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdul03021
]
129871118
03400 DNA repair and recombination proteins [BR:
sdul03400
]
129871118
Enzymes [BR:
sdul01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
129871118
Transcription machinery [BR:
sdul03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
129871118
DNA repair and recombination proteins [BR:
sdul03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
129871118
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
MRNIP
Motif
Other DBs
NCBI-GeneID:
129871118
NCBI-ProteinID:
XP_055801969
LinkDB
All DBs
Position
10:5205924..5215592
Genome browser
AA seq
1201 aa
AA seq
DB search
MMYGYINEYVDDNVDDREIMHEGVDVDEDEDESQEITQDDAWAVISSYFEEKGLVRQQLD
SFDEFIQNTMQEIVDETADIEIRPESQHNPARQSDFVETIYKIKFTQIYLSRPMMTESDG
ETNTLFPKAARLRNLTYSSPLYVDVKKEVIKKGHDFEEVTENQEFTKVFIGKVPIMLRSS
YCSLYNLSEKDLTELGECPYDQGGYFIVNGSEKVLIAQEKMSSNHVYVFKKRQPNKYAYV
AEVRSISEGQNKAPSGMFVKMLSRSNSKGASGQYIRATLPYIRTEIPIIVVFRALGFIAD
KDILAHICYDFADTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGFTREKRIKYAKE
ILQREMLPHVGTREYCETKKAYYFGYIIHRLLLCVLGRRPEDDRDHYGNKRLDLAGPLLG
GLFRMLFRKLTRDVRSYVQKCVDGGKDVNLQFAIKAKTITSGLKYSLATGNWGQANTAGT
RAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGL
VKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQSTKIFVNGCWVGIHRNPDL
LVRTLRQLRRQVDVNTEVGVVRNINLKELRLYTDYGRCSRPLFIVDKKKLMIKKKDIVSL
QMRETSEDSGWHDLVAKGFIEYVDTEEEETTMIAMTINDLTNSRLNPDEAYSDTYTHCEI
HPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLSYVLYYPQKPL
VTTRAMEHLHFRQLPAGINAIVAITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEE
KKMGTLVKEDFGRPDREHTMGMRHGNYDKLDDDGFAPPGTRVSGDDVIIGKTTPISQDEA
QGQSARYTRKDHSTSLRHSETGIVDQVLLTTNADGLRFIKIRMRSVRIPQIGDKFSSRHG
QKGTIGMTYTQEDMPWSAEGITPDIIVNPHAIPSRMTIGQLVECVMGKVAAHMGKEGDAT
PFTDVSVDSISKALHKCGYHMSGFERMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHS
RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCQQ
CGLIAIANLKKMSFECRSCRNKTDNVQVYIPYACKLLIQELMSMAIAPRMLTKELKPSSG
M
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
atgatgtatggatatattaatgaatatgtagacgacaatgttgatgatagagagataatg
cacgaaggagttgatgttgatgaagatgaagatgagtcacaggagataactcaagacgat
gcatgggcagttatcagttcatattttgaagaaaagggacttgtgaggcaacaattagac
tcatttgatgagttcatacagaatacaatgcaggaaattgttgatgaaactgctgatatt
gaaatccgacctgaatctcagcataatcctgctcgtcaatccgatttcgttgagacaatc
tataagatcaagtttactcagatatacttgagtagacctatgatgacagagtctgatgga
gagactaatactttgtttccaaaggctgcaaggttaaggaacttaacgtactcttccccc
ctatatgttgatgtgaagaaggaagtaataaagaaaggtcatgacttcgaagaagtcacc
gagaatcaggaatttaccaaagttttcattggaaaggttcctataatgcttagatcaagc
tactgcagcttgtataacctatcagagaaagatttaactgagttgggagagtgtccgtat
gatcaaggtggatacttcatagtcaatgggagtgagaaagttctgattgcacaggagaaa
atgagcagtaatcatgtctatgtattcaagaaaagacaaccaaacaagtatgcttatgtg
gctgaagttcggtctatatccgagggtcaaaacaaggcacctagcggcatgtttgttaag
atgctttctaggtctaattctaagggggcctcagggcaatatattcgtgccactcttcca
tacatacggactgaaattccaattatagttgtcttcagggcattaggatttatcgctgac
aaggatatattggcgcatatttgttatgattttgctgacacacagatgatggaattactt
cgtccttccttggaagaagcttttgtgattcaaaatcagcaggtggcacttgactatatt
ggcaaaagaggatctactgttggtttcacaagagaaaagagaatcaagtatgccaaagag
attctccaaagggaaatgcttccacatgttggtactagagagtattgtgaaactaagaag
gcctactattttggctacatcatccatcgtcttttactctgtgtactgggacggaggcct
gaagatgatagggatcattatggaaataaaagactggatcttgctggccctttacttggt
ggcttattccgaatgctattcaggaagctaacaagggatgtgagatcctatgttcaaaag
tgtgtcgatggtggaaaggatgtgaatttgcaatttgcgattaaagctaaaacaattaca
agtggacttaagtattctcttgctaccgggaactggggacaagcaaatactgctggtacc
agggcaggagtttcacaggttttgaatcgcttgacatttgcatctactctttctcacctg
cgtagattgaattcaccaatagggcgggagggtaaattggcaaaacctagacagcttcat
aattctcactggggaatgatgtgtccagcagaaacgcccgaaggacaagcatgtggactg
gtaaagaaccttgctttaatggtgtacataacagtaggatcagcagcaaatccaattttg
gagtttttagaagagtggagtacagaaaattttgaggaaatatctcccgcggttattccc
caatctaccaagatttttgtaaatggttgttgggtcggcattcatcgtaatccagatctg
ttggttaggacactgagacagctgaggagacaggttgatgttaatactgaagttggagtt
gttcgcaatataaatctaaaggaactgcggctatatacagattatggacgttgtagtagg
ccattattcatcgtggataaaaagaagttgatgataaagaagaaggatattgtctcactg
caaatgagggagacatctgaagattctggctggcatgatcttgtggcaaaaggatttatc
gagtatgttgatactgaggaagaagaaactacaatgatcgcaatgaccataaatgatctt
acaaattcaaggctgaacccagatgaggcttattctgatacctacacacactgtgaaatc
catccatctttgatattgggagtgtgcgcttcaatcataccatttccagatcataaccag
tcccctcgtaacacatatcaatctgctatgggaaagcaagcaatggggatttatgttacc
aattaccaatttcggatggatacattgtcctatgtactgtattatccacaaaagcctctt
gttactacgcgggctatggagcatttgcatttcaggcagcttccagctggcattaatgcc
attgttgccattacctgctattctggctataaccaagaagattctgtcatcatgaatcaa
tcttcaattgaccgtggcttcttccgctctctatttttccgttcatatagagatgaagag
aaaaagatgggaacgctagttaaagaggattttgggcgtcctgatagagaacataccatg
ggaatgagacatggaaattacgataaattagatgatgacggatttgcacctcctggaaca
agagtttctggtgatgatgtcataattggaaagaccacacctatttctcaagatgaggct
caaggacaatcagcaagatacacgcgcaaagaccatagtactagtctacgacatagtgaa
actggaattgtggatcaggttcttttgacaacaaatgcagatggattgagatttatcaaa
ataaggatgagatctgtcaggattccacagattggagacaaattcagcagccggcatgga
caaaaaggaaccattggaatgacctatacacaagaagacatgccgtggtccgctgaaggc
atcacccccgatatcattgtgaatccacatgccatcccttctcgtatgacaataggtcag
ctagttgagtgcgtcatggggaaggttgctgctcacatgggaaaagaaggagacgctacc
cctttcactgatgtttctgtggatagtatcagcaaagctctacacaagtgtggttatcac
atgagtggttttgagagaatgtataatggtcatacaggccgtaaattgactgcaatgata
ttcttggggccaacttactaccagagactgaagcacatggtggatgataagatccattct
cgtggccggggtcctgtgcagattctcactaggcagcctgctgaagggagatctcgcgac
ggaggactacgatttggggagatggaacgtgactgtatgatagctcatggagctgcacac
ttccttaaagagaggctgtttgatcaaagcgatgcttacagagttcacgtatgccagcaa
tgtggtttaattgctattgctaatctgaaaaagatgtcattcgagtgcagatcttgtagg
aataaaactgacaatgttcaggtgtatattccctatgcctgtaagcttctgattcaagag
ctcatgtcaatggcaattgccccaagaatgcttacaaaggaattgaaaccatcaagtgga
atgtaa
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