Solanum dulcamara (climbing nightshade): 129871123
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Entry
129871123 CDS
T09577
Name
(RefSeq) probable E3 ubiquitin-protein ligase RHC2A
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sdul04131
]
129871123
04121 Ubiquitin system [BR:
sdul04121
]
129871123
Enzymes [BR:
sdul01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
129871123
Membrane trafficking [BR:
sdul04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
129871123
Ubiquitin system [BR:
sdul04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
129871123
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1117
Zn_ribbon_19
zf-RING_2
zf-C3HC4_2
zf-RING_11
zf-C3HC4
zf-rbx1
zf-RING_UBOX
zf-C3HC4_3
zf-ANAPC11
Prok-RING_4
Rad50_zn_hook
zf-RING-like
Motif
Other DBs
NCBI-GeneID:
129871123
NCBI-ProteinID:
XP_055801977
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All DBs
Position
10:70810288..70812275
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AA seq
395 aa
AA seq
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MSSTYWCYRCNRFYRVWSEESITCPGCNTGFVEEIEAPNRSTLSGSRRRHFPPAVMQTAA
RNTEQSPASGYGSGSSPGVRRNRRNTGDRSPFNPVIVLRGSTNGGGAGGEGGGGGGGGGF
ELYYDDGAGSGLRPLPASMSEFLLGSGFDRLLDQLAQIEANGIGRMENPPASKAAIESLP
TIEIIHSHIVTESCCAVCKEAFELGTEAREMPCKHLYHSDCILPWLSLRNSCPVCRHELP
SETRDVVDPNRAPPAPPSEQSVAANDEGEEAVGLTIWRLPGGGFAVGRLGRRGGERALPV
VFTEMDGGFNNNNNGVPRRISWGSRGSELRQSGGFRRFFGNLFSCFGGVGSSGSSSSSDS
RINQSRSSSMSSVFLASARRRRGWGFEANNGVRRW
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcaacttattggtgttatagatgcaatagattttacagagtatggagtgaagaa
tcgattacttgtcccggttgtaacaccggatttgttgaagaaattgaggctccgaaccga
tccacgctgtcggggtctcgacggaggcatttccctccggcggtgatgcagacggcagcg
cgcaacacggagcagtctcctgcttcgggttatggttccgggtcaagtccgggtgttcgt
aggaaccggaggaatactggtgaccggtcgccgtttaatccagtgatagtccttcgtggt
tctacaaatggaggtggtgcgggtggggaaggtggaggtggcgggggtggaggggggttc
gaactgtattatgatgatggagccgggtcgggtttgagacccttacctgcgagtatgtcc
gagtttttactcgggtcgggttttgataggcttttggatcagctggcacagattgaagct
aatgggattggaagaatggagaatccaccagcttcaaaagctgcaattgagtcactgcca
acaattgagataattcattctcatattgtgactgaatcttgttgtgcagtgtgtaaagag
gcattcgaattaggcactgaggcgcgcgaaatgccctgtaagcatttatatcattcagat
tgcatactcccatggctttcgctgcgcaattcatgtccagtttgtaggcatgaattgccc
tcggagactcgggatgttgtcgatccgaatagagcaccaccagcaccaccgagtgaacag
agtgtagcagcaaatgatgaaggggaggaagctgttggattgacaatatggagattacct
ggtggtggatttgctgttgggaggttaggtaggagaggtggggagagagctcttcctgtt
gtattcactgaaatggatggtgggtttaataataacaataatggggttccaaggagaatt
tcatggggttctagagggagcgaattgcgacaaagtggtggctttaggaggttttttggg
aacttgttttcgtgttttggtggtgttggttcatcagggtcaagctctagttcagattct
aggataaatcagagcagaagtagttcaatgtcatctgtctttcttgcttcagcaagaagg
cgcaggggctggggtttcgaagctaataatggagttagaagatggtaa
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