Solanum dulcamara (climbing nightshade): 129871516
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Entry
129871516 CDS
T09577
Name
(RefSeq) polygalacturonase-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul00040
Pentose and glucuronate interconversions
sdul01100
Metabolic pathways
Module
sdul_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
129871516
Enzymes [BR:
sdul01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
129871516
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GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Pectate_lyase_4
NosD
Motif
Other DBs
NCBI-GeneID:
129871516
NCBI-ProteinID:
XP_055802422
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Position
10:25670646..25673478
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AA seq
392 aa
AA seq
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MAKLIMSFIIVVFSFIVLFMELSNAATTYNVLTFGAKPNGETDTTQAFLKAWGVACSSVE
AATIYVPKGRYLIKSATFRGPCKNRITVKIDGTLVAPLDYWAIGNSGYWLLFIQVNGISV
IGGNIDAKGDAFWACRNSGNNCPVGARSITFNWANDVVISGLLSINSQLTHLVINSCNNV
MVRNVKIIAPDQSPNTDGIHVQSSTGVTIIGCRIKTGDDCISIGPGTTNLWMEKILCGPG
HGISIGSLGRDYEEDGVQNVTLAYSIFTGSDNGLRIKSWARPTTSFVKNINYRNIVMKYV
DNPIIIDQNYCPNSQDCPGQTSGVKISEVTYKNIQGTSTTEVAMNFDCSPSNPCQGIQIQ
DIKLTYMNKKAKSFCNNVQGIKKGLILPDTCI
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atggctaagcttataatgtctttcattattgtcgtcttttcttttatagttttattcatg
gaattatcaaatgcagcaacaacctacaatgtgttaacctttggtgcaaaaccaaatggc
gaaactgatacaactcaggcatttctaaaggcatggggagttgcatgcagctcagttgaa
gcggcgacgatttacgtacccaagggacgttatctaataaaatcagcaacatttaggggt
ccatgtaaaaatagaattactgtaaagattgatggaactcttgttgcaccattggattat
tgggccattggcaactctggctactggcttttgtttattcaggttaatggaatttcagtt
attggtggaaatattgatgctaaaggagatgctttttgggcttgcaggaactcaggaaac
aattgtccagttggagctaggtcgataaccttcaattgggctaatgatgttgtgataagt
gggttactatcaatcaacagccagttaacacaccttgtgatcaatagctgcaacaatgta
atggttcgaaatgtaaaaataatagccccagaccaaagcccaaacacagatggcattcat
gttcaatcatcaacaggtgttactatcataggttgtagaatcaaaactggagatgattgt
atatctattggtcctggtacaacaaatctttggatggagaaaattctatgtggacctgga
catggtattagcattggaagtctaggaagggattatgaagaagatggggtacagaatgtg
acattagcttactcaatattcacaggatctgataatggattaagaataaaatcttgggca
agacccaccaccagttttgtcaaaaacattaattatcgtaacatagtcatgaagtacgtc
gataatccaatcatcattgatcagaattattgcccaaatagccaagattgtccaggacag
acttctggtgtaaagattagtgaagtgacatacaaaaatatacaagggacgtcgacaact
gaagttgctatgaacttcgactgcagccctagcaatccatgccaaggaatccagatacaa
gacataaagctcacttatatgaacaaaaaggcaaaatcattttgcaacaacgttcaagga
attaaaaaaggactcattttgcctgatacttgtatatga
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